RNA id: XM_021567048.2


Basic Information

Item Value
RNA id XM_021567048.2
length 2817
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110492621
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68363174 ~ 68367397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGGGGggttccactagttaccacagccacaaagtcagaatggtatttttcgaaaaaattaatgaaaacaaaaatgtgctttttggtgtTAATTTTAGTTTAGACATACGGTTAGCatgtggttaaggttatggttaaggttaggcttaaaATCACACGTTAAGAACATAAATTGTATAAATGggcagggtttatgactttgtggctgtagtaACCAGTGACGACCCTTGTCAGGCAGGAAAAGACAAACAGGGAGGAAGGAGGCGTAGTAAACAAGGCAGATAACTACAACTTACTTAAAAAATAACAGTGCCAATACTTGCGCACAACAGTTTGTTTGGTGAATATTCACGATAGGCACGTTATTCCACCGTTAGTAATACATCCTGTACCCTGTGTTGTCACTGCAAGCTAGATAGTTAGCTAGACAAACTTGTCGCTAGCAGGCTAACAGGCTCCAGTTCCAGTAGCAGTGCCATCACAACGCGCCCAGGATGATCGCATTGATCAACAAGCTCCTTGACTGGTTCAAAGCACTGTTTTGGAAGGAAGAGATGGAGTTAACATTGGTGGGACTCCAGTATTCGGGCAAGACAACTTTCGTTAACGTGATCGCGTCGGGTCAGTTCAGCGAAGACATGATTCCCACAGTGGGCTTCAACATGAGGAAGATCACCAAGGGAAATGTCACCATCAAGCTGTGGGATATCGGCGGTCAGCCTCGATTCAGGAGCATGTGGGAGCGATACTGCAGAGGAGTCAGTGCCATTGTGTACATGGTTGATGCAGCTGACCCAGAGAAGACAGAGGCGTCTAAAAATGAACTACACAACTTGTTGGACAAGCCCCAGCTCCAGGGTATTCCTGTTCTTGTCTTGGGGAATAAGAGGGATCTTCCTGGGGCGCTTGATGAGAAggagctgattgagagaatGAACCTCTCGGCCATCCAAGACAGAGAGATCTGCTGTTACTCCATCTCCTGCAAGGAAAAGGACAACATCGATATCACGCTACAGTGGCTGATCCAGCACTCCAGAACCAAGCGGAGCACTTCATGAGAACCTCATCTCAAGACACAGGCCGTCACCTGTCCCAATTCCCCTGCCCTCTGTCCTCCCCAGCCTGTCCATCCTCCTTTTCTTTGGATGACCCTCTCTTgccaataccccccccccccccccgcctgcagtgttcattttatttttgtaatataaCACTTCTTGTGACCTATGACCTCTGATGGACAAAGTGGTACTTAGCGTCCCTGATGTTCATATGTCATACTTCACCATCTCTGTTGATATCGAGGTTTATATTCAACTGATCCAGAGACAGGTcagagtactgtacagtacataacctcTGTTCCCAATAGGTAGAGAAGACTGGAGTCTGAACACTGCATCACTTAGCAGCTTCAAAGTCAACTTTACCACACTGATATCACATTTCAAACAGTATTTATGtcttagaccagtggttcccaacctttctCTGTTAATGTGCCATCAACTGAATTTTTCTCTGCCCAGAGTACCCCTGATGTACCCCGTGTATATTTTACCAGAAAGCCTATGTTTTCATGGATCTTCAATTACCCCCTGTGggtaggccaggtaccccctgtgggTAGTgtccctggttgggaaccactgtcttTGACCATAGTCCTATTACTTCCCAACGACAGTGGTACTGTGTGTAATGATACTCTATGTACCTTTTGAAGGGGGAGTGTTACAACATTTGATTGAAATACTTGGGAGTTTGCACAagtctctccatttctctttttCTTTATAAGGCTAATGGGAGGTGTTGTTAAAGATGTCCTTGATGTAATCTCTAttgtgattatatatatatatatacatttgcattATGTCATCTTCTCTGTCTGTTGCTTGTCCTGACACACGTTTGGTAGTTTAGAAACAGCAGGAAGATTTTCTTTAAAGTAAGCAACATGGACAATTTTAATTTCCATTAGCCATGTCAATGGGCAAGCATTATCTGCACATTATTTACAaacaaaatatcaatgtttagATTTATGCATCCTTCTTTTCCCATTTCCTGTCATTGATTTATATCATTATGCAATAGCTCCTTTCCACCCAGTAATGTACAGCTACTATTTGACCAGTTTTCATGTCATTACAGGATCATGAATAACCCATTTAGAAATTGAAAATCTGTGATAaagaagtccccccccccccccccagataaaTTGAGATTATACAGGTGTCAGCCAATATAATCTAGGTGTTGGAAATTTCATATTAACTAACGATGAAGGCTTCTGTCTTAATTTTGTATTTAACTTCCATGTCTATGATATATTACCTCCGACATGGCCAATGTAACCATTGACAACCGCAACAACATCTCTGCTTTTTTGTTTGCATGCTGGGGCATAAGTATTTGTGGGATCTTTGAGAATTAActataaaaccttttttttttttatggcaaaTATAGTAAATACTATATCTGCTTTAACCTGTTTGTacattattgtttcaattaagttGATGATTGTGTTTTTAATAGGATATGCTTATGTATGATAACTAAAAACATTGGTGAAAACCACTTTCTACATGGTCTGCAGAATTCATATGATTGTTGCCACACAGGGCTCACAGTGGCTTTAGATTGTTAATGATGGTTGGTGCTTTTCATGTGGTGTCATGTGTATGTTTGTCTGGCTGTTTTCATGTATATGAAAGAATCAATGTGGGAGAAGACGTAGTGTTTTGGTTGTTCTCTAATTAAAGGATCCATGCCACGGCACTCGTCACAACCT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603854 lncRNA downstream 3522 68359373 ~ 68359652 (-) True G1404385
TU1603815 lncRNA downstream 27485 68281992 ~ 68335689 (-) True G1404348
TU1603842 lncRNA downstream 28221 68334541 ~ 68334953 (-) True G1404373
TU1603837 lncRNA downstream 35271 68327646 ~ 68327903 (-) True G1404368
TU1603836 lncRNA downstream 37162 68325731 ~ 68326012 (-) True G1404367
TU1603782 lncRNA upstream 1586 68368983 ~ 68369804 (-) True G1404321
TU1603869 lncRNA upstream 30722 68398119 ~ 68398401 (-) True G1404399
TU1603891 lncRNA upstream 66600 68433997 ~ 68434336 (-) True G1404418
TU1603867 lncRNA upstream 76938 68444335 ~ 68444743 (-) True LOC110491167
TU1603954 lncRNA upstream 159479 68526876 ~ 68527517 (-) False G1404474
XM_036947617.1 mRNA downstream 26238 68279354 ~ 68336936 (-) True LOC110492618
XM_036947615.1 mRNA downstream 26239 68279354 ~ 68336935 (-) False LOC110492618
XM_036947613.1 mRNA downstream 26240 68279354 ~ 68336934 (-) False LOC110492618
XM_036947614.1 mRNA downstream 26240 68279354 ~ 68336934 (-) False LOC110492618
XM_036947616.1 mRNA downstream 26240 68279354 ~ 68336934 (-) False LOC110492618
XM_036947635.1 mRNA upstream 2598 68369995 ~ 68378994 (-) False LOC110491166
XM_036947636.1 mRNA upstream 2598 68369995 ~ 68378994 (-) False LOC110491166
XM_036947637.1 mRNA upstream 2598 68369995 ~ 68381432 (-) False LOC110491166
XM_036947633.1 mRNA upstream 2598 68369995 ~ 68383907 (-) False LOC110491166
XR_005036606.1 mRNA upstream 2735 68370132 ~ 68383908 (-) False LOC110491166
TU1602806 other downstream 918995 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1868507 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1936852 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1936852 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2608564 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 423792 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 835889 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 910430 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1150358 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1711260 70078657 ~ 70095541 (-) True G1405917

Expression Profile