RNA id: XM_036947635.1


Basic Information

Item Value
RNA id XM_036947635.1
length 1773
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110491166
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68369995 ~ 68383908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTGAAGCCAAAGAAGAGGCTAGCTATTAACATACTGAGTCACTGTGTCAAAAAGACTGCATGTCTGTGCCTGCTCACTCTCTACTTCTCActgtgttactctctctctccctctctctctctttctgtttctcactGTGGTTGGTTCATGTCAATGGCAGACATTTCATTTGGTTTAGGATTACTCTGACATATTGACAGACCAGGATTCAGTTTCAGGGGATGTGAGATCTTTCATTAACTGCTGTTCTTTTGACAAGAAGAGTTGACAATAATTCAACACAGCACCATGAGTGAGTCAGTAGaatccacatcatcatcatcaacatcccaCCCTGTGGACAAAGACCAGTCAGCCTCCTGCCCTGCTGCCACAGCCCCTCGCAAAACAGTCCGTCTCCAGGAGAGACGGGGGTCCAATGTTTCCCTGGTGCTGGGCGTGAGCAGTCTCAGTCTGGAAGCAGTGGAGACCCTATGCTCCATCTCCACTCCCAGAGAGACCATCCTCCACCTGCTGAGGACCTCAACACGCCCTCTGACCCCCTCTCAGCTGCAGGAGGCGTCTGAAGAGACCAGCAGGCTGAACTCAGAGTACCAGAAAATTCCTCCAAACTTTGTGAATCCTTCAGAGCTGGATATTCCAGGACGTGCTTTAAAGGACAGATACAAGACCATACTGCCAAATCCTGAGACCCGTGTGTGTCTGAGGAACCCCGCAGCAGAGGAGGCGGGCGAGACTGAAAGATACATTAACGCTAACTACATAAAGGGTTACAACGGTGCACCTAGCGCCTACATCGCCACCCAGGGCCCCATGCTCAACACCGTGCTTGACTTCTGGGAAATGGTGTGGCAGGAGAGATCCACCACCATTGTCATGATCACCAAgctgaaggagaagaaggagAAGTGTGAGCTTTACTGGCCAGAGAAGGAGGGCAGCTATGGCAGATTTGAGCTCAGAGTGGCCATTGTGAAAGAATGTGATGGCTACACAATTCGAGACACAATTATTCAGGTGGGCTCAGAGAGCAGGCAGGTGAGGCACTACTGGTACTCCACATGGCCAGACCACCAGACTCCAGACTGTACTGGACCTCTGCTCAGACTGGTGGTGGACGTGGAGGAACACAGGCAGTCCCACCCCGGCCTAGGAACCACCATTGTCCATTGCAGTGCAGGGATTGGTAGAACAGGTTGTTTCATCGCCAGCAGCATTGGATGCCTGCAGCTAAAACACACCAGTAAGGCTGACGTGCTCGGAATCGTCTGCAAGCTACGCCTCGACAGGGGTGGTATGATACAGACCAGTGAACAGTACCAGTTCCTGTACCTTACCCTGGCCCAGTACAGCCGACAGCTGGTGAACACAGACTGTGGCTCAGAgagccctgtctctgtccctgtccagacTGGCAGTACTACAGGAGAAACGCGGTGACAGAGAAAGCCCAGCTGAagctctgtctttctgtatgGGAGAACAAGCTTCTGGaactctgtctttctgtatgGGAGAACAAGATTCTGGaactctgtctttctgtatgGGAGAACAAGATTCTGGaactctgtctttctgtatgGGAGAACAAGCTTCTGGAACTCTGCTCATGTGCTGTCTGTGGCAATCTCATCCCCTTGACTGTGACAGTTATTGCAGCATTTTTATGGACACGTGGGACTGGTTTGAATTGTATTGAAATTCATGAATAATCATTTTGTCCATATTTGCTACCCTGATAATAAATATGTTATGCCCTTGGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603782 lncRNA downstream 191 68368983 ~ 68369804 (-) True G1404321
TU1603854 lncRNA downstream 10343 68359373 ~ 68359652 (-) True G1404385
TU1603815 lncRNA downstream 34306 68281992 ~ 68335689 (-) True G1404348
TU1603869 lncRNA upstream 19125 68398119 ~ 68398401 (-) True G1404399
TU1603891 lncRNA upstream 55003 68433997 ~ 68434336 (-) True G1404418
TU1603867 lncRNA upstream 65341 68444335 ~ 68444743 (-) True LOC110491167
TU1603954 lncRNA upstream 147882 68526876 ~ 68527517 (-) False G1404474
TU1603955 lncRNA upstream 147882 68526876 ~ 68527517 (-) False G1404474
XM_021567048.2 mRNA downstream 2598 68363174 ~ 68367397 (-) True LOC110492621
XM_036947617.1 mRNA downstream 33059 68279354 ~ 68336936 (-) True LOC110492618
XM_036947615.1 mRNA downstream 33060 68279354 ~ 68336935 (-) False LOC110492618
XM_036947613.1 mRNA downstream 33061 68279354 ~ 68336934 (-) False LOC110492618
XM_036947644.1 mRNA upstream 65289 68444283 ~ 68620213 (-) False LOC110491167
XR_005036607.1 mRNA upstream 65289 68444283 ~ 68620213 (-) False LOC110491167
XR_005036610.1 mRNA upstream 286139 68665133 ~ 68670586 (-) True LOC118939573
XM_036947623.1 mRNA upstream 292421 68671415 ~ 68703597 (-) False LOC110492627
XM_036947622.1 mRNA upstream 292421 68671415 ~ 68703600 (-) False LOC110492627
TU1602806 other downstream 925816 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1875328 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1943673 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1943673 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2615385 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 412195 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 824292 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 898833 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1138761 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1699663 70078657 ~ 70095541 (-) True G1405917

Expression Profile