RNA id: XM_036947640.1


Basic Information

Item Value
RNA id XM_036947640.1
length 1827
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110492622
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68396762 ~ 68405191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTTCTCCTGTGGAGAACGGGGTGGATCCACTCCCTCTTAATATACCCAGGCTAAGGAGGCTGAGCCTTACATTTAAGAGAAGAAGCAGAGCAgctggagtacacacacacactacacactacacacactcacaaaatacacacgtacacaccgtaaacacacacgcactcacatacagaaacagacaaacagcaAGGCACAACGTCTGACACCGGCAGACATCTGAAGTGATTattgagagaaagcgagagagagagagcggggactTCACTTCCCAGAGTGACATGCTGTGGGGGACAGCTCTCTTGACTGGCCTGGTGGGACTGTATGTCATCGTCACCCAGTGTCCAGCCACCTGCCAGCTGAGCCAGGAGGACACGGAGACCCTCATGGAGCTGCACAACAGCTATCGGGGCCAGGTGGTACCCAGTGCCACCTACATGCGTAAAGTGAAATGGGATGAGAAGCTGAAGATCCTAGCTGAGGGCTACGCTGTGAAGTGTATGTGGGAACCGAACCCGGATCTAGAGTTGCTGAACATGGGAGAGAACCTGTTTGTGTCGAATGAGCCCTTGGACCTCAACATGACCATGGAGAAGTGGTTCTTGGAGCACCTAGACTacgactacaacaacaacagctgccaGGAGGACAGGATGTGTGGACACTACACTCAGATGGTGTGGGCGGACTCTCACTCTGTGGGCTGTGCTGCTCATCGCTGTGACACCATAGAGGGGCTGTCCTTCGAGAAAGTTAACTTCCTAGTCTGCAATTATTACCCAAAAGATAAGTTTAAGGATGAGAAACCCTATGAGCAAGGCGAATGGTGCTCCAAGTGCCCAGACAACGTACCGCAATGTGATCAGAACCTCTGCGTGCCTTATGCCCCTGAGTCTTCAGACGAGCCTGATGTTGAGGAGCCTGATGCCCCCGATCCTTCAGACAAGCCTGATGTTGAGGAGCCTGATGCCCTCGAGCCTTCAGAGGAGCCTGATGttgagaaggagacaacagagagCTCTACCCCACACAGAGAGCTTGTGTATGAGGGGGACGAGACAGGCACGGAGCCTGGGgacgaggaggatgaggaggagacaggCACGGAGCCTGGGGACGAGGAGGAGACAGGCACGCAGCCTGGggacgaggaggacgaggaggagacaGGCACGGAGCCTGGggacgaggaggacgaggaggagacaGGCACGCATCCTGGGGACGAGGAGGAGACAGGCATGGAGCCTGgggacgaggaggaagaggaggagtgggagggggaggagagagcagcggagagggagaaggagaggactaGGAACCAACCTCCGGCCAATGCAGGAAAGATAACTACACCACTACTTCTTGTTACCAGCCTAATGGCATTACTCTCAGTAGGATTGTGAGGTGAAGGTATGAGAGTAAGgcattacacacatacacacacactatctggAATTGAACTGAACATTGCTGGAAGTTGAATTACATTGTGCTATAACCATGTCTATAGCAGAGGGATTTGTTGATGGTTATTTTGTTATTATTTGCTCGCTAGTAATTACAGTTGCTAGTTTAACATATGCCTTATTAGCAATATCAATAAGCACACAACATACAACAGTTAACAATGTATTATAACAGTTGTATAATAACAGTTACGACCTGTTACAAATGTAACAGCAATACATTTTCTTAAAGCAAAGCACGTCCTCTATATGAATGTGATTCGTAAACCTAAAGGAGCATAACTACTGTCAATATTGCATATTTCTGTAAATGTCTGTATATAGAGTATAATAAATATTGTTTCTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603563 lncRNA upstream 22926 68371580 ~ 68373836 (+) True G1404153
TU1603497 lncRNA upstream 51155 68345284 ~ 68345607 (+) True G1404093
TU1603500 lncRNA upstream 70664 68325676 ~ 68326098 (+) True G1404096
TU1603515 lncRNA upstream 106303 68290151 ~ 68290459 (+) True G1404106
TU1603514 lncRNA upstream 106676 68289515 ~ 68290086 (+) True G1404105
TU1603577 lncRNA downstream 564 68405755 ~ 68406645 (+) True G1404166
TU1603582 lncRNA downstream 26922 68432113 ~ 68433787 (+) True G1404169
TU1603580 lncRNA downstream 29321 68434512 ~ 68443855 (+) True G1404168
TU1603596 lncRNA downstream 39188 68444379 ~ 68445658 (+) False G1404179
TU1603595 lncRNA downstream 40075 68445266 ~ 68446531 (+) True G1404179
XM_021564513.2 mRNA upstream 39593 68348773 ~ 68357169 (+) True LOC110491164
XR_005036609.1 mRNA upstream 51749 68301028 ~ 68345013 (+) False LOC110492620
XM_036947638.1 mRNA upstream 117473 68275495 ~ 68279289 (+) False LOC110492619
XM_021567047.2 mRNA upstream 117473 68275497 ~ 68279289 (+) True LOC110492619
XM_036947608.1 mRNA upstream 923069 67459278 ~ 67473693 (+) False LOC110492593
XM_036947632.1 mRNA downstream 16922 68422113 ~ 68431744 (+) True LOC110492623
XM_021567053.2 mRNA downstream 499619 68904810 ~ 68909231 (+) True LOC110492628
XM_021567054.2 mRNA downstream 507696 68912887 ~ 68915377 (+) False LOC110492629
XM_036947648.1 mRNA downstream 508702 68913893 ~ 68915383 (+) True LOC110492629
XM_036947649.1 mRNA downstream 526942 68932133 ~ 68934318 (+) True LOC118939574
TU1603494 other upstream 53267 68319655 ~ 68343495 (+) True LOC110492620
TU1603513 other upstream 106676 68289515 ~ 68290086 (+) False G1404105
TU1602989 other upstream 619271 67773556 ~ 67777491 (+) True G1403655
TU1602769 other upstream 657060 67738962 ~ 67739702 (+) True G1403463
TU1602718 other upstream 743315 67653068 ~ 67653447 (+) True G1403412
TU1603714 other downstream 276255 68681446 ~ 68681977 (+) True G1404281
TU1604245 other downstream 704523 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 840354 69245545 ~ 69253709 (+) True G1404785
TU1604359 other downstream 900505 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other downstream 900505 69305696 ~ 69312263 (+) True fkbp1ab

Expression Profile