RNA id: XR_005036607.1



Basic Information


Item Value
RNA id XR_005036607.1
length 6206
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110491167
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68444283 ~ 68620213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctctctgtcacactccctctctctctctctgtccctccccccgtctatctctctgtccctccctctctctctctctctctctctctctctctttctctctctcacgcccTCTCTCGTTTCAGACAGGGCATCATGTAGCAGCGCAGCAAGAAAGGAGGCTGTTCCGCAGTGcccctgcttctgtctttgttgtttttgtttgtctgttttttATCCCCCCGCCCCACCCCATCCGTGTTGTAATGACCCACCACCACTGCCAGCCTCAGGAGAGATGCCTGTACTTGAGATGGCAGTGAGCCCTGTCAAGTCCCTGTACTGGGAGgtgttcccccccatgtcctcATGCAGGGTCTACTGCACCCCTGTGTTCCACGGTGGCCTGCTCTATGTTCTGGGAGGATGCAATGAAACAGGCCTGCCTTTAGATACTGCTGAGGTGCTGGACATAGAGAGCCAGACATGGACCCAGCTTCCTCCGCTCCCTACAGCCCGGGCGGGGGCGTCGGCGGTGGCCCTGGGGGGTCAGGTGATGGTGATGGGGGGCATGGACCTCCAGCAGAGCCCCCTGTCCTCCGTGGAGGTCTACAACCCTGACGAGGGCAAGTGGGAGAGGAGGGCCAGCCTGGGACAGCCCTCCATGGGCATCACTTCTATAGAGAAAGatGGGAAGGTGTACGCGCTGGGAGGGATGGCAGCTGACACTACGCCCCAGGCGCTAGTAAGGGTCTACGAGCCGGAGAAGGACCAATGGCAGGCCTTGACCTCCATGCCCACACCTCGCTACGGAGCCACCTCCTTCCTGAGAGGCAACAAGATTTACGTGCTGGGTGGGCGTCAGGGAAAGCTTCCTGTCACAGCCTTCGAGGCCTTTGACCTGGAAATGAAGAGTTGGACGCATTACCCCTGTATCCCCAGCCGCCGAGCCTTCGCCTGCTGTGCTGCCACCGAGCGGGGCTTCTTCAGTCTAGGAGGGCTCCAGCAGCCCTGCCCCCATAACTTCTACTCCAGACCTCACTTCGTCAGCACGGTGGAGGAGTACGACCCAGAACAGGGTATCTGGATCAAACCAACCCGAGCATCCAGGATGAGGGATAAGAGAGCGGATTTCTCAGCCGGATGTCTGGGAGGAAGGGTCATCGTTGCGGGGGGACTAGgaaaccagccGTCACCCCTGTCGTCAGTGGAGAGCTACAACCTTGTGAAGCGACGTTGGGAGTATGCTGCCCCGATGCCCAGCCCCCGCTGCTGCTGTGCCCCCCTGCAGACCCCCAACATGCTGTTCCTCATCGGGGGTGTGGCCCAGGGGCCCAGCAACGCCGTGGAGGCCCTCTGTCACAGAGAGactgtgtgacacacacacatgcacagagacacacactaacacagctactatacacactCAAAAAAAAATACACAGGAAATGACTGTGGCGCTATTTGTGCATACACACCAGTACAAACACATTATTTGTGTACAggtgagggacacacacacactcatacagactCGTATTGGACCTGGACACCTGTCACAAAGGAGTTGTTGaacaaataacaacaacaacaaaagcacCACACACAATACTCATTTGAACATGACAGCATTTTCCAGGATAAAAGCAGGGTACTTTTCTGGAAATTAAAGGAATTTAGGGCCATATGTGTTTCACCACAGCATATCTGTTTCACCACAGCATATCTGTTTCACCACAGCATATGTGTTTCACCACAGCATATCTGTTTCACTACAGCATATGTGTTTCACCACAGCATATCTGTTTCACCACAGCatatctatttcaccacagcatATCTGTTTCACCACAGCATATGTGTTTCACCACAGCATATGTGTTTCACCACAGCatatctatttcaccacagcatatctatttcaccacagcatatctatttcaccacagcatatctatttcaccacagcatATCTGTTTCACCACAGCATATGTGTTTCACCACAGCATATGTGTTTCACCACAGCatatctatttcaccacagcatATCTGTTTCACCACAGCATATGTGTTTCACCACAGCATATGTGTTTCACCACAGCAGTGTCCGGTTGCCGTGGCTTGTTTACACTATTTCATTTAATCACCTTAAAAAAGTTGAGAGTTTAGGATACAACTTCggagtatgtgagtgtgtgtgttttggtcccTGTTGTTAACGTTAATGTTAACGTTAATGTTATTAAAATCACAGACTCCTGAATACCACCTCTAGAATTGTCGGCCAATACCTGCACTGTGGCACCAGAGACTCAGAGTAGAGCTCTTTGACACAAAGCCACATTTCCCTGAAGCTTAAAGACTTgtttttggagagaaaaaaagacataATATTTTACATCAGAGTTTAGCAATGAAACTTCAGAGAATGAAACCATATAAGAGTTGTTTTTAATGGGGAAAAGCAATAGCTCTTAACAGGAAGTCCTCCTGTACATATACCATTCTTATTCAACCTTTGACCTTTCAAGGAACTAACAGGAAATAGAGGGGACACCCAGGAGGGCAGTGGGAGGGGTTTTAGAGATAGTATTAGTGGACAGAGGGTGACGGTCACATTAGATTGACCTcataatactgtatatttttaGTATGTATTTTATGAGGATTTTCTTTCCTTGCGTCACCCCTGTTGAACCCCACATTCATTGGATCATGAGCTGGCTTTGACGCTGTCTGATTACAGCATCTCCTGATTCATGACTGATTATCTTTATCAACGTCTCCTGCTGGGTAGCTCTTCCATGTGCTAAATTACAGGTTGGTTAGGAGGGCTGCAGGAGGCCGGTTAGGAGGGATGCAGGAGGCCGGTTAGGAGGGATGCAGAAAGCAGGTTCGGAGGACTGCAGGAGGCCGGTTAGGAATACTGGCCCTGCTTAGGAGGACTACAGAGAGCGTAATGAAACTCTCAACCATATTCATATTCTAGAGACTATTAAATAGCTTATGGTTTCATTCTAGcacatagaccccccccccccccccccccccacacttacACTCCCACAACCACATACATATTTCTAGAAAAACgttgttgatgatgtcattgagATGTTCCCTTGGGGAGTGCAGTGTCTTTCTAAACACACTTTAGTGCCAGTTGATAGATGTATTTCTGGCTACGTGGGAAGTTGTGTTTCTGTATGCTCTAAGACTCACCACATGGATCTGGCTGGTTGGCAACAGCAATAGAGTGATGGATAGAATGCAAATATATGTACATACGGAACTGGATTCTCATCAGTGGAGAGAGACTGCTGTATTCGGTAACAGTCTGCAGGAGGAACCAGGGTCTCTTCGGCAGAACACTCTGGTTTCTAAGCTCTTGAGTACTGTTTAGAAAGAACttgcacgagagagagagagagagagagagagagcgagagagagacagagagagagagaatcatttTTCAGATGTGCTCTGGCGCTGACATGACATATGACTCAACAGCGTAAACTGCAGTTGACTCTAGTTCTGTACTGTAATCCTACTGCTGTTGGCTTCATAAACAGTGTTGTAGATCATTCAGTACATTTACTTTTCCCATTTGCTTTCTTTATAGCAGAGATCCCTTCTAAACAGTCTATTAGACTCAGGTTTTATATACGAtatgtctctctgccttctcttcctggGATCAAAGATGCTGAATCCACACATGACATATTTCCATACTTACTTGCATTTGATGAATATAAATCATTTCAGAACTgtgtcttatttttttttaccatcaaAGACTCTGTTTTTGTGCGGTTCACTGTGAACACCTGGTGTCGAGGCAACAGTCACTGTATCACACCCGCAAGTAGCATTACTGTGTAACAGTCAGTGAAGTATTGTTGCTTTTCCTTCCAAAATAAATTAGTATTTTAAATAATTTGTATTCTCtctaaaaaaaatccctgtttgctatattttgtatttttccaGTTTGTTGTTTTAACACCACTGGGCTTCTACAGCTGTCTATTTGCATTGTGTGGGTTGAGCTGTACAAGGTCATGTTTGTAGTGGTGTTGCCCTGTCATGTTGACACTTGGTCTGTTCTCTCTATGATGCTGTGCTGTGATGTGTTTCCATGGTGCGTAACCAGGGTGATGGTGTTAGCTGATGATCTCTGACTGTAACCTGTGCGTCCCCAACTCCTGTCTCAACGAAGGGAGGCTATGCAGTATGTCTGAACATCACAGAGGGgttcagaaagaaagaaagaaagcttGTCACAATTTTAATTATTTTTATATTAGGTTTACGTTTGAAGCAAGGAGGCCAGATAAGTTTGCTTTGGTCAAGATACACgtgtacacaaacacacgcacactaaTGATGTCACAGCTCATCCACATTTGGAGAAGGAGATTcctatacattgtagaatatgaGTGAGTAGAGGAACACCTGTGCCAATACTTAGTCTGTCGCTGATCCTAAACCAATCAAGAGATATCTGAATCAAGAAGAATAGGCCACTCCCACACTGATCTGTGGTGTGTGGCAACATTCATGTTCTAACTAACAATCAGCAGGAAGTGTTTTATTCCTATAATATGAGGTGAGGTGATCAGTGGGAAGTGTTTTATTCCTATAATATGAGGTGAGGTGATCAGCAGGAAGTGTTTTATTCCTATAATATGAGGTGAGGTGATCAGTGGGAAGTGTTTTATTCCTATAATATGAGGTCAGGTGATCAGCAGGAAGTGTTTTATTCCTATAATATGAGGTCAGGTGATCAGCAGGAAGTGTTTTATTCCTATAATATGAGGTGAGCTGATCAGCAGGAAGTGTTTTATTCCTATAATATGAGGTCAGGTGATCAGCAGGAAGTGTTTTATTCCTATAATATGAGGTGAGGTGATCATCAGCCCAAACAATGAGTCTGAGTAGTTATTGTCAAAAAAACAATTGGTTCCAAAAATATTTGAATTGGGCTGCATGTGTAAATGCAGCCCTAGAGACCGGATGAGGAGACAACTTTATTAGCGGACAATGTGCAGAGGAGAGCTTCAGGCATTTTGACAGAGCTCCGGTCTGACAGAGAGATGCCTGGATGGATTCCTGTAATTGTGTTTTGATTATGTTCTCTGGTCCAGTAAGACATTGTTACAGTAATGTGGTACAGGTACAGTGCCCAGGCTGAGTTGTGACTCTAGTACAGTAAGACATTGTTACAGTAATGTGGTACAGGTACAGTGCCCAGGCTGAGTTGTGACTCTAGTACAATAAGACATTGTTACAGTAATGTGGTACAGGTACAGTGCCCAGGTTGAGTTGTGACTCTAGTACAGTAAGACATTGTTACAGTAATGTGGTACAGGTACAGTGCCCAGGCTGAGTTGTGACTCTAGTACAGTAAGACATTGTTACAGTAATGTGGTACAGGTACAGTGCCCAGGCTGAGTTGTGACTCTAGTACAGTAAGACATTGTTACAGTAATGTGGTACAGGTACAGTGCCCAGGCTGAGTTGTGACTATAGTACAGTAAGACATTGTTACAGTAATGTGGTACAGGTACAGTACCCAGGCTGAGTTGTGACTCTAGTACAGTAGTTCAGTGCCTATAAATGTGAGGTAGTGCCTCGACCATGAATTCTTTAATAAACTATTTTGACGTGCTGTCTGATTGGATTGAGTATGTGTGgcattatttctgtatttttctcTTTCACATTAACAGCAGAGCAGGCAGCAACCAGAGGCCTCGTCTGCGCTGCAGTGTGTATTTCAATGTCTACTTAGCAGAGGTGTAACGAAATGTGAGAAAATGTCACCTCGTTCATTATAGATGAACCGGGCGGTAGAAGGTTTCTGCTCCTGTGGGGAGAATGGAAGTGGTGTGCCTTCACGATATATTGACTTTGAGGTATGACTTGCACGGTTCACTGGTTCTCAAAATtagttatttcatttttttaccaTTTCATTGTAAATAGTATGTCATCTGCACTGAGTGTCATCATATTCAACAGAACGGTGTGTAGCGTAGAATTCCATGTACCACGGGACAACAAAGACTGGAATATGACAGAGAAGTATTTTATATTTCTACTGATGCACTCTGTTTACCAGGAGCTACTTATAAACATGGCTAATGTCCCCGTTTCTAGTTACAATGTTTCATAATTGTACATCACAATGTCAATGAATAAACGTTGTCTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1603891 lncRNA downstream 9947 68433997 ~ 68434336 (-) True G1404418
TU1603869 lncRNA downstream 45882 68398119 ~ 68398401 (-) True G1404399
TU1603782 lncRNA downstream 74479 68368983 ~ 68369804 (-) True G1404321
TU1603854 lncRNA downstream 84631 68359373 ~ 68359652 (-) True G1404385
TU1603842 lncRNA downstream 109330 68334541 ~ 68334953 (-) True G1404373
TU1604010 lncRNA upstream 8374 68628587 ~ 68628817 (-) True G1404525
TU1604011 lncRNA upstream 8879 68629092 ~ 68629332 (-) True G1404526
TU1604012 lncRNA upstream 9366 68629579 ~ 68629788 (-) True G1404527
TU1604014 lncRNA upstream 12094 68632307 ~ 68632509 (-) True G1404529
TU1604015 lncRNA upstream 12324 68632537 ~ 68632777 (-) True G1404530
XR_005036606.1 mRNA downstream 60375 68370132 ~ 68383908 (-) False LOC110491166
XM_036947633.1 mRNA downstream 60376 68369995 ~ 68383907 (-) False LOC110491166
XM_036947637.1 mRNA downstream 62851 68369995 ~ 68381432 (-) False LOC110491166
XR_005036605.1 mRNA downstream 62933 68378596 ~ 68381350 (-) True LOC110491166
XM_036947635.1 mRNA downstream 65289 68369995 ~ 68378994 (-) False LOC110491166
XR_005036610.1 mRNA upstream 44920 68665133 ~ 68670586 (-) True LOC118939573
XM_036947623.1 mRNA upstream 51202 68671415 ~ 68703597 (-) False LOC110492627
XM_036947622.1 mRNA upstream 51202 68671415 ~ 68703600 (-) False LOC110492627
XR_005036603.1 mRNA upstream 52626 68672839 ~ 68703599 (-) False LOC110492627
XR_005036599.1 mRNA upstream 52626 68672839 ~ 68703600 (-) False LOC110492627
TU1602806 other downstream 1000104 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1949616 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2017961 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 2017961 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2689673 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 170976 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 583073 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 657614 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 897542 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1458444 70078657 ~ 70095541 (-) True G1405917

Expression Profile