RNA id: XR_005036596.1


Basic Information

Item Value
RNA id XR_005036596.1
length 7129
RNA type mRNA
GC content 0.52
exon number 26
gene id LOC110492627
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68671413 ~ 68703603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAAGGAAGCGATGAGAGAGGACGCGAGGAGATCATGCAATTGAGAGTTTTCCATTGTGAGGGGTCGGTTTCTACAGTGCCGCCTCAGCCTGCCTGCCTCCAGGAAGTGGTCAGTCTTCGAAGTGGTTTTCGGTTTGGACTGTTTTTGTTCCTAAACAAAGTGGGAGTCATTTGCCGTGGGCTGATAAAGTAACTTAGGTTGAAGCGATATATCGTTTTGTTGCCATTCACGTCACCTATATTTGAGTAAAAATATTTAGGAATCTATAAGAGATACCCGGATAACGAGAATATTCTAGAAACACCAAGAGTACGGGGTTTCGATTGCGGGAAGGGGTGAGCAGAGGCCCGCGGCGGTCAAGGAGCTTAGGGAGGGCTGAAGAAGTACGGACGCGCCGGCCATTGTGCACAAAGACGGGGAGACGACACTCCAAATTATACATGTTTTGACCTCTGATTCTGTTCCGGGAGATTTCTGACCTGTATCATCGCCAAGATAGCTGGACCGGGTAGAAAGCGGCACACCCCAGAACCAGACCCCAGCAGCAGCGGCAGCAGTGACGCCGGGGACGGGCGGCCCGTGAGCGCCAAGCGCCTGAAGATGGCCAGCAGCAGTGAGTCAGGTCGGCGTAATGGGGGTCAGCGCAGCGCAGATGACAGCACCAGCAAGAAGAAGCAGaaggacagggccaaccaggagAGCAGGGAGGCCAagcgagcagcagcagcaggggcCAATGCAGAGCACAAGAAAGATGTGTTTGTGGACTGGAAGCAGAATGCTAATGAGGTGATCGCGAGGCTGCGCTGTGGAGACGGGGTGCAGAGGGTGGAGGACGTCACCACTACCTTCACCGACACAGACTGTCATGCCCGCTTCCCAGATGGGCGCCAGTGGGACTGTCATCTGCATGGGGAGATTGAgggctcctgcagcaaagtacagTACAAAGAGAAGAGTGGCTTCCTCCTGCTGGTCATGCACAAGAAGATCCCCTTCCACTCCTGGCCTTCCCTTATGCAAAATAAAAAGGAGAAGCAGCCTGTGAAAGTGGAGGCCAAGAACGGTAAAGACCAGAAACAGTCGCCTCTGGTAAAGCCTGAGAAGTCTGTCCCGGAGACGACAGACATGGCTGAACTGTCCAGCCAGACGTCTGCTCCACCGGCACAGTGTGAACAGAGGCGTGGCAAAGCAGAGCGAGGTGTCAAACGCATCATGAACTACAAACCAGCCGACAGGCTAGAGTCTGTGGTGAAGGCTGGAGGAGAGGGGCAGACCAAGCCGGTCAGTGTCAGTAAAGGGGACCTGCCTCAGGAGCCCAGTGCCAAGCGCCCCGTCCATCCCCCCAAGGTCTCCACGGACCCCACCTCAGAGATGCCCAGGGATACACACTCCAAGTCCACAGCCAATGGGAAACCACACAGCCCCACTGGCCGGGACCTCCAGACATCTACAGCTGGTGACAATCGAGCTGAGCTGCTAGGCAATGGCCATGAGGGTACAACACCTGAGGTAGCCGTCAGCCACACGCAGCAGGAGTTGAAAGTTCAGACGGAGGACAagaaggccccagagtctgatTTCAAGGCTGGTGCAGAAGAGGTAATCATACCGGCAGCCACTGTGTCCAGTGCTGAGATCAGCCCCAAGGCTGGAGCCTccaccaacagaacagagaggCCAGGGGAGGCCGAGAGGACTGATTCTGAGATGCTAGTGAGACATCCTCCGAATGAGGCTGACCAGGCCACTGAGTCTCTAACACCAACCAATCGGTCAGGATCAGGGAATCCTGTGACTGCAACAGACACCGAGCAGGCTGAGtcctccagcagcagcagcactcaggaggagaagagggaccGGTCTAAGGAGGAACCTCTGGAGATAAAGCAGGAGGAAGCAGTTCCAGAGCCAATGGTGAACCTGAAGTTGTTGAAGAACGACTCGTACGAGAAAGGGACAGACCTGATGGTGGTCAACGTGTACATGAAGGGTATCGTCAGAGAGACGGCCAGGGTGATCTTCAGAGAACAGGACTTCACCCTACTCTTCCAGACCAGCGATGCAAATTTCTTGCGTCTTCATGCGGACTGCGGAGCGAACACCGTCTTTAAGTGGCAAGTCAAACTCCGGAACCTCATCCAGCCTGAGCAGTCCACGTATGCCTTCACCCCATCCCGTTTAGACATCACCCTGAAGAAGAGGCACAGCCAACGCTGGGGGGGCCTGGAGGCCCCTGCTACACAAGGTGCAGTGGGTGGCGCCAAGGTTGCTGTGCCCTCCGCACCGTCCTCTCAGGCCAGTCAGCCAGGCAGCAGCAAGCACTCCCTCTCTGCCAAGGAGGAGCCACCCTGGGTGGGGGAGGGGAAACCCAAGCCCTCTCGGACAGTGGACGGATGCCTGGACAGTGTGTCATCCCGCACCGTCTCAGACCATGTCCCCATCAAACAGGAGCCTGCAGTCACGTCCAAGCCCACCTGTATGGTCCAGCCCATGACCCATGCACCTCCTGCCGACAGCCAGCGCAGcgttgaggaggaagaggaggaggaggagaaggtgtgTCTGCCAGGCTTCACAGGCCTGGTCAACCTGGGCAACACATGCTTTATGAACAGTGTCATCCAGTCTCTTTCCAACACCCGGGAACTCAGGGACTACTTTCACGACCGGGCGTTTGAGAATGAGATCAACTGTGATAACCCGTTGGGGACGGGTGGTCGGCTGGCCATTGGGTTCGCTGTGCTGCTCCGGGCTTTGTGGAAGGGTACCCACCATGCCTTTCAGCCCTCTAAGTTAAAGGCGATCGTGGCCAGTAAGGCCAGTCAGTTTACAGGCTATGCCCAGCACGATGCCCAGGAGTTCATGGCCTTCCTCCTGGATGGGCTCCACGAGGACCTGAACCGCATCCAGAACAAGCCTTACACAGAGACCGTGGACTCAGACGGACGGCTGGACGAGGTGGGTGAAATAAAGGTGGTGGCAGATGAGGCGTGGCAGAGGCACAAGATGAGAAACGACTCGTTCATCGTAGACCTCTTCCAGGGCCAGTACAAATCCAAGCTCGTCTGCCCAGTGTGCTCCAAGgtTTCCATAACCTTTGACCCCTTCCTCTACCTTCCCGTGCCCTTGCCCCAGAAGCAGAAGGTCCTCACAGTGTTCTACTTCGCTAAAGAGCCTCACAAGAAACCCATGAAGTTCCTGGTGAGTGTGAGTAAAGAGAACTCGAGCACAGCCGAGGTCCTGGAGTCCATCTCTCGGAGTGTGAGGATCAAGGCAGAGAACCTGAGATTGGCTGAGGTAGTGAAGAGTCGCTTCCATCGGATCTTCCTCCCATCCAACTCCCTGGACACGGTCTCCTCCTCAGACATGCTCTTCTGCTTCGAAGTGCTGTCTAAGGAGCTGGCCAAGGAGAGGGTGGTGGTGCTCCGAGTCCAGCAGAGGCCTCAGGTCCCCAGTATTCCCATCTCGAAGTGTGCTGCCTGCCTGAAGCCGCCTCTCTCGGATGAAGAGAAACTGAAGCGATGCACGCGCTGCTACCGCGTGGGTTACTGCAACCAGGTTTGCCAGAAAAAACATTGGTCGAGCCACAAGGTTCTGTGTGGGCCCAACATAGAGAACGTGGGACTTCCCTTCCTGGTCAGCGTCCCTGAGTCCAGACTCACCTATGCCCGGCTGTCCCAGCTGCTGGAAGGATACTCAAGGTATTCAGTGAACGTGTTCCAGCCCCCCTTCCAGTCTGGCAGGACGTCTCCAGAGGTCACCCAGTGCCTGGCTGACCTTCCCCCTCCAGCAGAGACCCCTGAAAGTGTGGGGCCAGGGGACAAGGCCAGGGGCGGTGGGGCAGGGGACTCGGAGCAGGAGGGCTCCTCTCTGGTTCCTGAgtctccactagagacagcccAGGCCTCAGCACATCCAGCCGGAGACCCAGACGCACTCTCCACCCACACCACAGACTCGGGTTTCATTGAGGCCTCCTCTGACtcccagggagagaaggagacctCCTGTGAGAAGGCTGTCAGACCAGAAGGTAAAGCTGCTGTGACCGGCTACCAGCAACCATCAGAGTCTGCGTCCAGCCACACCTCTCAGTTCTACATCACCATCCTCCACTCCAACAGCAAGGAGCAGACACTGGAGGAAAAGGAAGAGGCCGTTCTGGACCTCCCTGAGGACTCCAGCCTGGAGCTGGTGTGGAAGAACAACGAGCGTCTCAAGGAGTACGTCCTGGTTCGGTCCAAGGAGCTGGAATTTGAAGAGGACCCTGGGTCGGTCAACGAGACAGCCAGGGCTGGACACTTCACCCTGGAGCAGTGCCTCAACCTCTTCACTAGGCCTGAGGTGCTGGCACCAGAGGAGGCATGGTACTGTCCAAAGTGCCAGCAGCACAGAGAGGCTTCCAAGCAGCTGCTGCTATGGCGTCTGCCCAACGTCCTCATCATCCAGCTCAAACGCTTCTCCTTCCGCAGTTTCATCTGGAGGGACAAGATCAACGACATGGTCGACTTCCCCgtcagGAACCTGGACCTCAGTAAGTTCTGTATTGGTCAGAAGGACGACATGCAGCAGCCGCCCATCTATGACCTCTATGCAGTCATCAATCACTACGGGGGCATGATCGGAGGTCACTACACTGCCTACGCACGCCTGCCCAGCGCCCAGAACAGCCAGCGCAGTGATGTTGgctGGCGTCTTTTTGATGACAGTACGGTGACGATGGTGGAAGAGAGCCAGGTGGTGACACGCTATGCCTACGTGCTGTTCTACCGCCGCCGCAACTCCCCTGTGGAACGACCACCTCGCTTACTGGGGGCCGAGTCCCCCACCTCTGCAGGAGCCAGCGCCAGCCAGGCATCTCTGATATGGCAGGAActggagcaggaagaggagggtgTTGAAGAGGGCCCCCGGGGCCTGTTCCGTCCCAGGCTGGGGAGGAGAAGAGCAgccaggagggaggagggggtggaggggcagGTGTGGCGGCTGCTGCGCCAAAGGATCCCGCATTATTCCGATGACGACTGTGTCCTATATTTTGTCCTGGGTACCTTGGCTGCTCTACTAGCGTTGTTAGTGAACCTACTCTACAGAGCCAACTGGGGCTAAGCGGCCAGTATCACACCCCACACATACACGCTTATATGctaaagcaataaggcacgagagggtgcggtatatggccaatatatcacagctaagggatgttcttatgcacgacacaaCGTGGAGTTCCTGGaccacagcccttagccgtggtatattgcccatataccacaaaccacgAGGcaccttattgctgttataaactggttactgaagtaattagagcagtaagaatacatgttttgtcatacccgtggtatatggtctgatacaccacggctgtcagccaatcagcattcagggctcgagcCAACCAGTTTATAAATAGGCTtatacacaaaaaaaatgtaaagtctAATGAAATATCCATGCCAATACgaaaacattttgttttgtagATGGCCTATAAATCAATATGCTGCTGAACACATTCAAAATGTCAACTAAATTATATCTGTTAATCAAGTCCAATAGCATCTACTAGTAACTTGGCTCAGCAAGGCTTGGCCTTCTTATTTACTGCAGTCCATAATGTATGTCCCTATAAGATACGTTAAATTCTGGTTCAAACCTACTTCAGCCTTTTATGTGTCCATGCcaagtgtctctctctcatgtaGGATTTCAGTACAAAAATCTGAAATGCGTGTTTCGTAATGGTTAGTCCTATGTTTCTGCACAAGAGATGCTGCAGAGAGGACTTGAACTAGGGTATATAGGGTTAAAGTCCTATTGTGATAGTTTTGAGTGGGTGAGGGAATAAGCTATTGTAATCCTTTAGCTCCATCCCAGGGTGGTATGATGGGCTCCGCCTTGCTTTGTGCAGTCATGACTTTGTACTGTAACCTGAAGACAGCTAAAATGTGTGTTTTGCTTTAATGAATACAGAGTGTTTTTAGACTCACTGTAAGCTAGTATGTGCCTTTTGCTTGTTTGTCACATTGCTGATTTTATTTTTGATTTTATGTTGTCAATGGTAAGCTCTTAATTCAGCAGTTATATTGCTTTCTGTCCACCAGGGTTAGGCTCAATTCGAATTGGAGGCTGttaattcaggaagtgatttgaatttaaaattcagaaatgtttttctttttttttttctccgaAATAGATAACTTTTACTTTTCAGTTTATTGAGAAGTCATTGAAAATGAAtgcattttttttctcttcaGATTATTTGCATTGTAGTTTTTGTTTACTTCCTTcctgtttacttcctgaattgactgccttatgttcgaattgagcccaaccctgctGTTCATACGTTTTCCTTATCCCTGTCAGACTTCATGAAAGCCACTTGTTTAATCTTTTTAAAtgtgcttcttttttttttggggggggggggggggtgaaatagCTAGATATGTCAGAGCTTTACGACTGTTTCTGCAAAAGAATAAGTGCGCTGATGTACAGTATGAAGCTGAAGCTTAGTAGTGACGTCAACTCATTAGGTGGACACCATCTGCTTTCTATCAATGAAAATTGCTACACTTAATGATTATCTGTGTCGCTGGAATATGGACTAACCTTCTGTAACCGTGTTGTAGTAATCTGTTCAAGTCTCAGGGATATCACACTGCACTCTGTCACATGCCTCTCCAGCAGTAGATGGGCTTGGAGGCCAGGTATATTCACCATCTGCTTTCAATGCCCAGTATGTCTCAGTGGTTTATCCAGTGGTTTGCCTCAGTGAAATGTCGACacaaggaaatgtgaattatctAGGCTCCCTACAGATGGCAAAGATTCCCTATGGTTGTGGGTGTAAAGGTGAAAGTTACTGATGTAAGGAAGTGTATATTTTATAGCATAAATATATTTACTAGATTGCTGTATAGAAATTGTACAATTTTAAATGTAATCTTAATAGTCgctattatttaaaaaaagaaagtggGACATTTCCTAGCAATAATGTGTACAGGTCCTTCCATCTTAATGCTGCCCCAATAAACCAACACTTGTACTACTTTTCAAAAATAAAATGTCAACCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604035 lncRNA downstream 20500 68648270 ~ 68652339 (-) True G1404543
TU1604015 lncRNA downstream 40062 68632537 ~ 68632777 (-) True G1404530
TU1604014 lncRNA downstream 40330 68632307 ~ 68632509 (-) True G1404529
TU1604012 lncRNA downstream 43051 68629579 ~ 68629788 (-) True G1404527
TU1604011 lncRNA downstream 43507 68629092 ~ 68629332 (-) True G1404526
TU1604085 lncRNA upstream 85290 68788892 ~ 68789098 (-) True G1404588
TU1604106 lncRNA upstream 182573 68886175 ~ 68886406 (-) True G1404608
TU1604123 lncRNA upstream 196762 68900364 ~ 68901492 (-) True G1404624
TU1604147 lncRNA upstream 201206 68904808 ~ 68907251 (-) True G1404634
TU1604127 lncRNA upstream 210027 68913629 ~ 68915352 (-) False G1404628
XR_005036610.1 mRNA downstream 2253 68665133 ~ 68670586 (-) True LOC118939573
XM_036947644.1 mRNA downstream 52626 68444283 ~ 68620213 (-) False LOC110491167
XR_005036607.1 mRNA downstream 52626 68444283 ~ 68620213 (-) False LOC110491167
XR_005036606.1 mRNA downstream 288931 68370132 ~ 68383908 (-) False LOC110491166
XM_036947619.1 mRNA upstream 318 68703920 ~ 68772253 (-) False LOC110492626
XM_036947620.1 mRNA upstream 338 68703940 ~ 68772253 (-) True LOC110492626
XM_036945858.1 mRNA upstream 87711 68791313 ~ 68793328 (-) False LOC118939478
XM_021564517.2 mRNA upstream 191379 68894981 ~ 68896120 (-) True LOC110491168
XM_021567055.2 mRNA upstream 211974 68915576 ~ 68917426 (-) True LOC110492630
TU1602806 other downstream 1228660 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2178172 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2246517 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 2246517 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2918229 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 87587 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 499684 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 574225 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 814153 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1375055 70078657 ~ 70095541 (-) True G1405917