RNA id: XM_036947620.1


Basic Information

Item Value
RNA id XM_036947620.1
length 6250
RNA type mRNA
GC content 0.54
exon number 34
gene id LOC110492626
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68703920 ~ 68772253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCATTTAAACGAGACTCGGGACAGAACTTTGGAGAGTGGTCGCCAGACTTCAGATCACACTGCTAACTCTGCTCAACCTCGCATTCTATTTAACCGGGGGACTCACAGCATTCGACTTGATTTAAAATACGGGGATCAAACCTACTGATATAAAGGGTTCTGAATCTACACTTCAAAGGGGACTGATTGACTGATGACCATAAAGCCATGCACGTGACACCGGTCATTTTCATCTGTGCCCTAGCCTATGCCACCGCCCAGGGGCCCGACCACGCCCACGGCTGTACCCATGGCAGCTGTTACCCCGCAACGGGAGACCTGTTGGTGGGCCGTGAGAAGAGCCTGAAGGCCTCGTCTACCTGTGGCTCCAGGAAGAAAGAGCCTTACTGTATCGTCAGTCATCTACAGGATGAGAAGAAATGTTTCCAGTGTGACTCTCGCCGGCCATATGACCCGGTCTACAATACCATCAGTCACCGCATTGAGAACGTTATCACAACGTTTAAACCACACCGCAAGAAGTCCTGGTGGCAGTCAGAGAATGGAAAGCCTGATGTCTTCATTCAACTGGACCTTGAGGCAGAATTCCATTTCACTCATCTAATCATGACCTTCAAGACGTTTCGCCCAGCAGCCATGGTGATTGAGCGATCGGCAGATTTTGGACGTAACTGGCAGGTGTACCGCTACTTTGCCTACGACTGTGCCTCGGTCTTCCCCGGGATATCCAAAGGTCCCCTGCGCAAGGTGGATGATGTCACCTGTGAGTCCCGCTACTCTGACATCGAGCCATCCACTGAGGGAGAGGCCATCTACAGAGTTTTGGACCCTTCCATCCACATTGAGGACCCCTACAGCCCCAACATTCAGAATCAGCTGAAGATCACTAACCTGCGTGTGAACTTCACCAAGCTGCACACCCTGGGTGACAACCTGCTGGACTCCCGCGTGGAGATCAAGGAGAAGTACTACTACGCCATGTATGAGCTGATCGTCCGCGGCAACTGCTTCTGCTATGGCCACGCCTCCGAGTGTGCCCCCATCGATGGGATCAAGGATGAGGAGGGCATGgtccACGGGAGGTGTGTGTGTAAGCACAACACCAAGGGTCTGAACTGTGAGCTGTGTGACGACTTCCATAACGACGTGCCCTGGAGACCGGCTGAGGGACGCAACACCAACGCCTGCAAGAAATGCAACTGTAATGGTCACTCCAACCAGTGTCACTTTGACATGGCGGTGTATCTTTCCACGGGCAATGCCAACGGTGGCGTCTGTGACGATTGTCTCCACAACACCATGGGACGCACTTGTGAGATGTGTAAACCCTTCTATTACCTGAACCCCAGCAGGGACATCAGAGACCCAGGAGTCTGTAGTGCCTGTGACTGTGATCCTGATGGTTCCCTGAACGGGGGCATCTGTGACGGGCATGATGAGCCGTCCCTGGGCATGGTCGCTGGGCAGTGCCGCTGCAAGGACCATGTGGAGGGACCTCGCTGTGACAAATGCAAGTCTGGCTTCTTCGGCCTGAGTGCAGACCATCCTCTTGGCTGCCAAGcctgccAGTGTGACCCCAGGGGTACGGTGTCAGAGAGACCACCGTGTGACCCTGTGAGCGGGGACTGTTTCTGCAAGCGCCAGGTCACCGGACGCAGCTGTGGCCAGTGTCTGCCAGAACACTGGGCACTGAGTCACGACCTGAATGGCTGCAGAGACTGTGACTGTGATGTGGGCGGAGCCACCGATAACCACTGTTCAATGGACAATGGGCAGTGTCGTTGTCGTAGTCATATGATGGGCCGTCAATGTACCCAGGTGGAGTCTGGGTACTTCTTCATGGCTCTGGACCACTATACCTACGAGGCTGAGCTGGCCATGCTGGGACAGggctGCAGTgtggagcagagggagcaccAGCCTGAGCGCCCTGCCACCTGGACTGGCACTGGGTTTGCCAAGGTCCCAGAGGGCAGCAGCCTGGAGTTCTCCATCAACAACATCCCCTACTCCATGGAGTACGACCTCCTCATCCGCTATGAGTCGCAAatgCCACAGGACTGGGAGGAGGTCCGTGTGACTATCGTTCGGCCAGGGCCCATTCCCACCAGCAGCCCATGTGGAAACACCATCCCTGCAGACGACATGCTAACTGTTTCCCTGCCTGCAGGATCCAggtTTGTCGTGCTGCCTCAATCTATCTGCTTGGAGAGAGGAATTAGCTACACGCTTCACTTTGAGTTCAGTCGCTATCTGAACGGGAACAATGTTCTCATTCCCGGTACAACTGCTGCCAACATTCTAGTGGACTCTATCTCCCTCCTCCCACGTTACTCCTCCCTGGAGATGTTCATCGGCGGAGACCCCGCCTCCATTGCCCGGAAACAGAGTTACGAGCGCTACCGCTGCCATGACGGGGCTAAGAGTGTGGCACGCCCCCAGATCAGTGACGTCTGTGCCAAACACATCACCAGCATGTCAGCCATCATTAACCATGGAGCTTTGGCTTGCCAGTGTGACCCCCAGGGTTCAGTCAGCTCAGTGTGTGAAATGCGCGGAGGTCAGTGTCGCTGTAGGTCCAATGTGATTGGACGGCGCTGTGACCACTGTGCTCCTGGGACGTACGGCTTTGGACCTGCAGGATGTAGAGccTGTGAGTGTAGCCTAGAAGGTGCGGTCACTCGGTTCTGTGACCAGCTGACTGGGCAGTGCCCATGCAGCCAGGGTGCGTTTGGCCAGCGGTGCGATGGATGCCAGGCAGGACACTGGGGCTTCCCCAACTGTAAGCAGTGCCTGTGTAACGGACATGCTGAGGAGTGCCACCAGAGGACCGGAGCCTGTCTCAACTGCAGGGAAAACACTGGAGGGGACAAATGTGACAGGTGTGCCAATGGTTACTACGGCAACCCGGTGCTGGGCACAGGTAACGGTAACCGATGCCAGCCCTGCCCCTGCCCGGATGGCCCAAACAGCGGAAGACACTTCGCTACCTCCTGTCACCAGGACAACCGCAACAGACAGGTGGTCTGCAACTGTAACCAAGGATACACAGGTTCCCGGTGTGAGGAGTGTGCCCCAGGTTACTACGGCAACCCCTCCCGGCCAGGTGGGCGATGCCAGCCGTGCAGGTGCAGTAACAACATTGACATGTCAGACCTGGATGCGTGTGACCGGAGGACAGGAGAGTGTAAGAAGTGTCTCTACAACACAGAGGGACCGGACTGTGGCGTGTGCAAGAGCGGTTACTATGGAGACGCCTCGCGACGCAACTGCAGAAagTGCACCTGTAACTTCCTGGGCACAGCGCAAACCCAGTGTACAGCACGGGATGAGTGTGTCTGCCAGCGTGCCACAGGGCAGTGCCTGTGTCTACCCAACACTATCGGCCTGACATGTGACCACTGTGAGCCCAACTACTGGAACCTGGCTAGTGGGCGGGGCTGTGAGGCCTGCGGCTGTGAACCCAACAACGCTGTCAACCCGGCCTGCAACGAGTTCACTGGAAAGTGTCAGTGTCGTGACGGATTTGGTGGGAAGATCTGCACAGACTGCCAAGAGAACTACTGGGGCGACCCAAGGATCCAGTGTAGAGCCTGTGACTGTGACCCCCGGGGCATAGAGACCTCTCAGTGTGGCCAGAAGACAGGCCACTGCGTGTGTCAACAGGGGGTGTCGGGCGTGCGTTGTGATCAGTGTGCCCGGGGCTTCTCAGGCCAGTTCCCTAACTGCCAGCCCTGCCACCAGTGCTTTGGGGACTGGGACCGGGTGGTACAGAACCTGGCTGTCCGAACCAAGACCCTGTCGGAGCGGGCTGTGGAGATCCAGAACACGGGCCTGACTGGAGCCTATGAGAAGGCCTTCAGAGACCTGGAGGAAAAGCTGGCACGAGCTCAGGGCATCGTCAATGCCCGCAACACCACCACAGAGGCAGTCAGCAGCCTGATGGAGCTCATTGAAGACCTCAGGTCTCAGATAGGGGAGACCACAGATGTACTGAATCATCTGGAGGGAGACCTGACCAGTGTGGGGAACAGTAATGTTGAGGCCAGTAATGAGCTCAGTGTTCTAGAGAGAGAGGCCAAAGAGCTCAACCTGACCTCAGATCAGCTCCACCGCCAACTGGACATCCTGAAGAACTCTAACTTTCTGGGTGCATATGAAAGCATCCGAAGCTCCTATAATAAGTCCCGTGACGCAGAGCGGCGAGCCAACCAGTCCACCACTACCACGCCCAgcactgtcagccaatcagcagacACCCGCCGCAAGACAGAACGCCTCATTTCTGCCAAGAAAGACGACTTCAACCGCAAGAACGCCGCCAACAAGCGAGCCCTGGGGGACCTCAATGCCAAGGCACAAACCCTGGACATGAAGAAGATCAACGAGAAGGTCTGTGGGGGCCCTGGCGATTCCCCCTGTGTAGAGAGCCATTGCGGAGGGGCGGGTTGCCGTGACGAAGAGGGGAACAGACACTGTGGAGGCCTGAACTGCAACGGTGCCGTAGCGATGGCAGAGAACGCCTTGGAAAAGTCTAAGCATGCAGAGAAAGAGCTGAACATAGCCATGAAGGAGGTAGAGGAGCTCTTCCACAAGGTGGCAGATGCCAAGACCAAGGCGGAGGAGGCAAAGGGTAAAGCCCAGGCAGCTCTGGACAAGGCCACTAACACCAAAAACAAGGTGGAGCGCTCCAACAACGACCTGCGGAACCTCATCAAGCAGATCCGGGACTTCCTCATGCAGGAGGGTGCTGATCCAGACAGCATTGAAACGGTGGCTAACCGTGTCCTGGAGCTGTCCATCCCAGCCTCACCACAGCAGATCAGACACCTGGCAGAGGAGATCAAGGACCGGGTCCGGAGCCTCTCCAACGTAGACGCCATTCTGAAACAGACACAGGACGACGTGCGCAAAGCAGAGCAGCTGCTGCAGGAGGCCAAGaaggccagGAATCGGGCAGACGGGGTGAAATCCACAGCAGAGACGGTGAAACGGGCACTTGAGGACGCTAAGACGGCCCAGGCTGCAGCGGAGAAGGCCATACAGCGGGCGAAGGTTGACATTGGTGAAACGGAAGTCCGACTAGCACAGATCGAGTCTGAGACCTCCAGCAGTGAACATGACCTGAATAATGCCATGGATCGCCTTGGCAACCTGGGTCGGGGGATTGACGGTCTGAAACTCAAACGTGCAAAAAACAGCATGGCAGCAGCTCGAGCTGAGGAGACAGCCACTATGGCACGGGACAAAGCCAATGATGccaagcagattttagATGGCGAGCTGACGGATAAGTATCACACAGTGCAGGACTTGGTGGACAGGAAAGCCAAGACCGTCCAGGAGGCCAAAAAGACAGCAGAGCGCCTGAGAGACGAGGCCAAGGAGCTACTGAAAGACGCTCAGGACAAGCTCCAGAGACTAGCAGAACTAGAGAAAGACTATGAAGAGAACCAGAAAAAGTTGGAGGGCAAAGCCCGGCAGTTGGACGGCCTAGAAGACAAGATGAAGGCTATCCTCAATGACATCAACAAACAGATTCAGATCTACAACACCTGTCAGTAAACAGGGACCTGGCCGAGTTAAACCaaacactgactgactgcagaCACTATGTGAGCCTACTATTGCTTTACTCTCTTGTAGGGTGTACACCCTATGCGCTCTAGTGAGGAACTCAGTACTGCACCTACAGCCATGGTGCTTATCCAACTACACTGTGTAACTGTGTCTTGTTGATTGTAAGATTTCACACATCTAATATAACATTGTGTGCCCTCAGTGTATTACTGTGTGACTTTCAACTGAAGGATAGAAGTGGCTCCACATGACATTTACGAAAATAATTatccatttgtgtgtgtgaagAATACGAAAATGTGCAAATATGTTTAGCCTCAACTCAGATCATCCTCCAAACACTGCCACATTCAGAATTTAAATAATGCCAAAAAAGTACTTTTTTCTGGAAAAACGATGAACAAAAGTTGTTATGTGTACCGACATGAGGATGAACCGGGGGATGATCGGTGACTTTGACATGGTTTCTGATCTCTCCTGGATTAAATGATGGGATGCTTGTTCTCTTTAAACACTACAGACTCAATGGATGGTATTGTTTCTGTAATTGAGAGAAAGCTGTTTGTGAGTTGCCTGACAATAATACTGAAAAAGTATTTCCACCCTCCAGTGTAGGAAAACTGAAATTGTGTGACTAATAAAACTGGAACACCATCAATGCACACAA

Function

GO: NA

KEGG:

id description
K06243 LAMB2; laminin, beta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604024 lncRNA downstream 30406 68671413 ~ 68673534 (-) True LOC110492627
TU1604035 lncRNA downstream 51601 68648270 ~ 68652339 (-) True G1404543
TU1604015 lncRNA downstream 71163 68632537 ~ 68632777 (-) True G1404530
TU1604014 lncRNA downstream 71431 68632307 ~ 68632509 (-) True G1404529
TU1604012 lncRNA downstream 74152 68629579 ~ 68629788 (-) True G1404527
TU1604085 lncRNA upstream 16639 68788892 ~ 68789098 (-) True G1404588
TU1604106 lncRNA upstream 113922 68886175 ~ 68886406 (-) True G1404608
TU1604123 lncRNA upstream 128111 68900364 ~ 68901492 (-) True G1404624
TU1604147 lncRNA upstream 132555 68904808 ~ 68907251 (-) True G1404634
TU1604127 lncRNA upstream 141376 68913629 ~ 68915352 (-) False G1404628
XR_005036598.1 mRNA downstream 337 68672839 ~ 68703603 (-) False LOC110492627
XR_005036596.1 mRNA downstream 338 68672839 ~ 68703602 (-) False LOC110492627
XR_005036597.1 mRNA downstream 338 68672839 ~ 68703602 (-) False LOC110492627
XR_005036600.1 mRNA downstream 338 68672839 ~ 68703602 (-) False LOC110492627
XR_005036604.1 mRNA downstream 339 68672839 ~ 68703601 (-) False LOC110492627
XM_036945858.1 mRNA upstream 19060 68791313 ~ 68793328 (-) False LOC118939478
XM_021564517.2 mRNA upstream 122728 68894981 ~ 68896120 (-) True LOC110491168
XM_021567055.2 mRNA upstream 143323 68915576 ~ 68917426 (-) True LOC110492630
XM_036947659.1 mRNA upstream 340763 69113016 ~ 69122652 (-) False LOC110492636
XM_036947658.1 mRNA upstream 340763 69113016 ~ 69123466 (-) True LOC110492636
TU1602806 other downstream 1259761 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2209273 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2277618 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 2277618 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2949330 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 18936 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 431033 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 505574 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 745502 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1306404 70078657 ~ 70095541 (-) True G1405917

Expression Profile