RNA id: TU1604092


Basic Information

Item Value
RNA id TU1604092
length 1377
RNA type TUCP
GC content 0.50
exon number 4
gene id LOC118939478
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68791189 ~ 68795025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagacccggttcacctctctctgttccagtcagacccggttcacctctctctgttccagtcagacctggttcacctctctctggcCAGTGGGATTCCCAGACCTCCCTGTTTCATCCTGTCCCTGTGTGTTTGTTCAGCATTTTGACTGGAGGTGTTTATGCTGGTTTGTGTCTGGGCCAGTGAGGCTCTTCACTCTGTGCATCATTTGGGTCAAATGTTTGATTTCTTTCACTTGTATTTTGCTGGTTTCATTTCCTTTTAACCTTATAGGGCCATAAGGCTTTCCCACAACTCTAAACAGAACAACGTCATTCCAGAATGTTTGATAAGAGACTGGGGATAAACAATGATTGGTAAATGGTGTGGGTGGCGGTGTTTTGGTGAGTGTTTTGGTGTTATTGGATCAGGTAGTGATCGGTAATAGTCCCAGTAGATAATACTGTGATCGGTAATAGTCCCAGTAGATAATACTGTGATCGGTAATAGTCCCGGTAGATAATACTGTGATCGGTAATAGTCCCAGTAGATAATACTGTGATCGGTAATAGTCCCAGTAGATAATACTGTGATCGGTAATAGTCCCAGTAGATAATACTGTGATCGGTACAGTAATGAAAGAGAtggaacatgttctctctctccctgcccagGTGTGTAAATGGGTTCTATGGAAACCCAGTGCTGGGGTCCGGGGATCACTGTCGACATTGTCCCTGTCCTGGTAACGCAGAAAGCGGACGCTCCAACGGACACTCCTGTCACGCTGGCAGCTCATCCAATCAAATCCTCTGCAACTGTACACATGGCTACATAGGGCCTCGCTGTGATCGGTGTGCCCCTGGTTACTACGGCAACCCCAAGCATCCAGGTGGGCAGTGCCGCCCGTGCCAGTGCAGTGGCAACATCGACGCCCACGACCCCGAGTCATGCGAGCCCGTGAACCGGCCGATGCCTGAGCTGCCTAAACAACACGGATGGACCCTCCTGATCTGACTGTAAACATGGTTACTACGGCAACGCCCTGGCCCAGGACTGCAGGCGTGAGTTTCTACATCGTGACGGCTGGTTGGAATCTCTAATGAGTTCTGTCTCTGGTGATGCCCACTGGAGACAAACTATTGGCATTTTGTGATGATATGTGTCTTGTTGGACATTGGCTCAATTATATAGCGTGActgtctgaggcactgcatctcagcgcaagaggcgtcactacagtccctggttcgaatccaggctgtatcacatccggctgtgattgggagtcccatagagcgacacacaattggcccagcgtcgtccggcgtcgtccggagtaggccgtcattggaaataagaatgtgttcttaacggacttgcctagttaaataaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604085 lncRNA downstream 2091 68788892 ~ 68789098 (-) True G1404588
TU1604024 lncRNA downstream 117655 68671413 ~ 68673534 (-) True LOC110492627
TU1604035 lncRNA downstream 138850 68648270 ~ 68652339 (-) True G1404543
TU1604015 lncRNA downstream 158412 68632537 ~ 68632777 (-) True G1404530
TU1604014 lncRNA downstream 158680 68632307 ~ 68632509 (-) True G1404529
TU1604106 lncRNA upstream 91150 68886175 ~ 68886406 (-) True G1404608
TU1604123 lncRNA upstream 105339 68900364 ~ 68901492 (-) True G1404624
TU1604147 lncRNA upstream 109783 68904808 ~ 68907251 (-) True G1404634
TU1604127 lncRNA upstream 118604 68913629 ~ 68915352 (-) False G1404628
TU1604129 lncRNA upstream 118604 68913629 ~ 68915352 (-) False G1404628
XM_036947619.1 mRNA downstream 18936 68703920 ~ 68772253 (-) False LOC110492626
XM_036947620.1 mRNA downstream 18936 68703940 ~ 68772253 (-) True LOC110492626
XR_005036598.1 mRNA downstream 87586 68672839 ~ 68703603 (-) False LOC110492627
XR_005036596.1 mRNA downstream 87587 68672839 ~ 68703602 (-) False LOC110492627
XR_005036597.1 mRNA downstream 87587 68672839 ~ 68703602 (-) False LOC110492627
XM_021564517.2 mRNA upstream 99956 68894981 ~ 68896120 (-) True LOC110491168
XM_021567055.2 mRNA upstream 120551 68915576 ~ 68917426 (-) True LOC110492630
XM_036947659.1 mRNA upstream 317991 69113016 ~ 69122652 (-) False LOC110492636
XM_036947658.1 mRNA upstream 317991 69113016 ~ 69123466 (-) True LOC110492636
XM_036945796.1 mRNA upstream 559477 69354502 ~ 69379181 (-) True LOC110492644
TU1602806 other downstream 1347010 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2296522 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2364867 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 2364867 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 3036579 65720507 ~ 65754610 (-) True LOC110492562
TU1604570 other upstream 408261 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 482802 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 722730 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1283632 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 1424852 70219877 ~ 70221256 (-) True LOC110492660

Expression Profile