RNA id: XM_021567060.2


Basic Information

Item Value
RNA id XM_021567060.2
length 4559
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110492634
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68973714 ~ 69006032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACTTGATTCTGACAGTCGCGGGAGTGTGCGTGTTGGGAACGAGGCTCCAGGCAGGGGCCGCTTCCTGGGTGCGTTAGAAGCGTCACGCAGGACAGCGTTTAAGTGGTTAAACGGGCGATGTGACGGCGAGTTTTGAGAAGATAAGTTTAGAGCAGAGGGCAGACGAGGGCAGCCCCGTGAGGGCAAGTGTGTGCTGTGGCGCTCCTGTTAGCGAAAGATGAACAAGAACCACCGAGTGCCGAGCAACCGGTCTCTGGGCGCCGTGGAGGTGAAGAGCAAGttTGGGGCTGAATTCCGCCGGTTCTCCCTGGACCGGTCCAAGCCGGGCCGGTTTGATGAGTTCTATAGGCTCCTACAGCACATGCACCGGATCCCAAACGTGGACCTGCTGGTGGGCTATGCTGACGTCCACGGTGACCTGCTGCCAATCAACAACGATGACAACTACCGCAAAGCCATCTCCGTGGCTGACCCCGTGCTTCGCCTCTTCCTGCAGAGGAAAGAGGAAGCCGACTACTCTGCGTTTGGTCTGGACTCTCTGACCCGTCCCAAGAAGACGGTCCTAGCGGCCATGTTGCTACGGCCTGATGCCAACCGGAAGAAGCCCCTTGTGATCATCAGCCTGCCCAGGGACTTCAGGCCCGTCTCCTCCATCATCGACGTGGACATCCTCCCTGAGACACACCGCCGGGTTCGCCTCTACAAGCACGGCCAGGAGAAACCGCTGGGCTTCTACATCCGAGACGGCTCCAGTGTCCGGGTCACGCCCCAGGGCCTGGAGAAGGTTCCTGGGATCTTCATCTCCCGCATGGTGCCTGGGGGCCTGGCTGAGAGCACTGGCCTGCTGGCCGTCAACGACGAGGTTCTGGAGGTCAACGGCATCGAGGTGCAAGGCAAGTCTCTGGACCAGGTGACAGACATGATGATCGCCAACAGCCACAATCTCATCGTGACGGTGAAGCCGGCCAACCAGCGCAACAACATCGTACGGAGTGGCGGGGGCGGGGCAGCGTCCGGGAGCTCGGGACACTCGTCCGACAGTGGCACCAGTTTCTACGGCTACTCCTCCCCGGGCATTGCCGTGGCGACGACTCCGGCAGACATCATCCAGAACTTCCATCCAGAGGAGCTGGAgagtgatgaggatgatgaggacCTTGTGATAGAGGTGGACGGAGAGGCCATGCCCATCCCACGGACCTCCTCGGCCAGCTGTACCATACCCTTCATTCCTCGCTACATGCCCCACCTGGACCTCCGCACCACCAACGGAGCCCTGGCCTCCCACAACCGCTCCGGCTCACTGGGCACGCTCAGCACTGCCGACAGGGGCCTGGAGGGAAGGAGCTTAGAGGAGGAAGGCACCGTCAttacactgtaaacacacactgtCGTAGTTGCATAGTATTTACGGGAACGcaaacacacagtctgacatacactgAAGCGTACTGTCATGCATACACAAAGAACGACAACATCCACACATGCGTTGCCATAGTATCGACACCGCCCTccctatgctgtctgacagacACATTGATTACCCGTGGTGTTTTGTGTGGAGGAGGAAAGTGACTCTGCCTCGGAGAAAGGCCTCCAACTTCTCATTGACAACCATAAAAAGCACTTGTTTCTATTTAGTGAGGGATGAGACTGTTTCTGTGGTCTTCCACTTGAGGGCAGCAATGAGATGCTACACTGTTGTTTTTTCAATTTTGTGAACCATAGGAAAGGACGGATTTTAATGAACAAACAAATGAATGAACGAATGAATGATTGCAGACATCTTTAGGCTTTGACCTTACCCTAGCTATTCTGCCCTGGTTTGTTTGATAGAGGAGACTACATTTCACAATCTGCTTTTGCCTTGTCACTTTGCAAACGACAACAACCATTCCCCTAGGAGATTACAGCTTGTGATTTTGGGAACAAAAGTAATGGCTTCTATCCTACATGTTACCATAGTAACTACCAAAGAGTAGAGGTCTGCAATAACACTCAGATTTTAGTCTGAGGAGAAACGATGTATATGGGTCTCTCTTCATGGACCCGGACATTAACCACTATTCCTGTGTTTCGTCTCCAAGCTTTTAATGTTGTTTATCACAAGAAAAAAACTAGAAGCAATTATGTAAAGCAACTGAAATGACAAAATctcttaaaggggaaatctgtaaTTGCAACATCCAATTTTAGACTTTTAAAtgaatgtatttgtgtgtgtgtgtgtgtgtgtgtgtactgattcttgaagaatataactaatAAAAGCCTTGTGAGCTTAGTTCTATTGTCGAACCCCATCAGAATCCAAAATTTAAGCTTGTTATACCTCTTTGTTTTGTAGACTAGGTAAAtacaaacaaacactgtatagcgtCAACATGGTTAGAACTCTCATTTTGTTATCATGCATTGTCATTCCTTGTATCCGTAGATCTGTCCATGGGTTCGAGAGTGTTTTCAATTCTATAAACCCCATCCTTCAGCCTTCTACCAAAATAGTGGCGGGGAGTCAGTTTTGTTGTTTTGAGCTGCAGATTTCCGCTCTAAATATTTTCATTCTATTTCTTTTACGGTTTTATTTTAATCTAAAATGGTTCACtgtatgatttttttattttttttatttagttcAAAATAAGTATCTCAATTCACTGTCACGGACCAACACCTCATCTGACAGGTGTGCTGTCCCTGCCTGGATGAAGATCCATCTTGTTTTTCATCCAACTTCTCTTTCCTCACGACAAGGGCAATTTCCCCACTTCGTGTACATAGTGTGACAGAATGTGATTGTAAATGTGATTCTCTGATTTCTcagacatgttctctctctcgctctctcgtctctgtctgtctgtctggtttggGAGGATGTATTTGTAACAACAGATGGTGGCTTTCTTAGTTTTCCAACTCTTGAGTTCACTTGGATGTGGCCTGAATCATTCACATTTGAAGAGTGTTCTCGCTTCATGTACAGTATTTATTCACTATTTCATTGTATATTGTTTGGAGTAAACCCTCAGTCGATCTTCAACAGAATGTGATACTGGTATAGATGACTAGCTGGACTGTGACACTGAGTACCACAGAGATGTTACGTAACTTAGAGCCAGGACGCTAATGACCCTGGAGAGGATGTCTGGGACTGTTATAGAACCCAGTCTGCAGGAAGAAGTTAgaatattttgtcttgcacacGCTCTCACACATACCGACCCGGTCTCTGTGTTTGAGTAAGGTGGAGTTTGTCTAGCGCTATGCATTATGACTTGGATCAGGTGATCATTCCCACTTGTTCCTGGTCACATGACATCACCTGATGACTGTACCTACCTGTTCAGGAAGGTGAACACCAGCAAGTTCATTAGAATGTCATTAGTGTAGAGCCAACCGACTTCCCCAAAACACAAGACAGGATAGCACTGCAGAACATCCTCATTCCAATAGATTGTAGTTTTATTCTGTGTGTTTAGTTGCCAGTGAGCTTGTTGTGAAGTATAATGAGAATTTAGACTAAGGCTGTACTCAACATGTAAACATTAAATGACGCTAACAGACTCCACTGAGAGCAGATGGTGTATCGATGTCCATTTCTCCTATTGCTTTTTACCATCCTCTCTGATGGGGAAACAAAATGTTCTGGGAACAGTTgcctccctcacccccctctctcctcctcagtctgacTGCAATGGGTCTTACCTGCAGAAATACCTGATGAGAATCATAAACACTGGATCACTGTAATCAGACATGCCATCTACCCAGAGTAGGGTATCATGTGAACTCCACTAGCCCTCCCTATCAGATATGCCATCTACCCAGAGCAGGGTATCATGTGAACTCAACTCCCCCTCCTTTTCATACTGTGAGGTACAGTACTACTCTATTCTGTTATGGTACAGGGTGTAGAAGAGTTGggattgctttctctctctccctctcattccaaACAGTTCTGGAACATTCAAGGCATGATGAGTCACATTTTAGAAtggaaagtaaaaaaaaaaaaatttaaaaaatgatctGTTAATTTATTATTGTTTTAACTACACAGGACATGGGGATCGTAACCACAACAACTATTTATTTTCTAATCATGTTTCTGTATATTCTTTTTCATTGCTAAGTCAGTAAACATTGTAATGTGTTATAACTGATCCACTGTGTTAATTCATGGTTTAATTTCATTTTCTAATCTGTTCTTTCCCTTTTTTTCAAAAGTGATTTTGTTAAATAGCTTATTTTCTGTACAAACAGCTTCTAGGGGTTTAGATTATGACACTTTTCCTGTACTGTGAATTCCTCTATTCCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTGGGAGAGACCTGTATGTTTCAGAGAACACTAACCAGGCTTTGGAATTtggtttgtctgtttgttttttaa

Function

GO:

id name namespace
GO:0016324 apical plasma membrane cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604220 lncRNA upstream 127 68973334 ~ 68973593 (+) True G1404695
TU1604219 lncRNA upstream 781 68972600 ~ 68972939 (+) True G1404694
TU1604206 lncRNA upstream 21318 68952139 ~ 68952402 (+) True G1404685
TU1604190 lncRNA upstream 26355 68947133 ~ 68947365 (+) True G1404674
TU1604178 lncRNA upstream 35437 68938045 ~ 68938283 (+) True G1404663
TU1604284 lncRNA downstream 64759 69070791 ~ 69077789 (+) True G1404736
TU1604285 lncRNA downstream 67754 69073786 ~ 69076041 (+) True G1404737
TU1604287 lncRNA downstream 70486 69076518 ~ 69076984 (+) True G1404739
TU1604290 lncRNA downstream 74891 69080923 ~ 69084989 (+) True G1404741
TU1604295 lncRNA downstream 86618 69092650 ~ 69094088 (+) True G1404745
XM_036947652.1 mRNA upstream 3503 68961747 ~ 68970217 (+) False LOC110492632
XM_036947651.1 mRNA upstream 3503 68962030 ~ 68970217 (+) True LOC110492632
XM_021567057.2 mRNA upstream 12710 68957565 ~ 68961010 (+) True LOC110492631
XM_036947649.1 mRNA upstream 39402 68932133 ~ 68934318 (+) True LOC118939574
XM_036947648.1 mRNA upstream 58337 68913893 ~ 68915383 (+) True LOC110492629
XM_036947654.1 mRNA downstream 3469 69009501 ~ 69056918 (+) False LOC110491169
XM_036947655.1 mRNA downstream 3471 69009503 ~ 69056918 (+) False LOC110491169
XM_036947653.1 mRNA downstream 3472 69009504 ~ 69056918 (+) True LOC110491169
XM_036947656.1 mRNA downstream 54323 69060355 ~ 69104116 (+) True LOC110492635
XM_036947660.1 mRNA downstream 118845 69124877 ~ 69168201 (+) True LOC118939575
TU1603714 other upstream 291743 68681446 ~ 68681977 (+) True G1404281
TU1603494 other upstream 630225 68319655 ~ 68343495 (+) True LOC110492620
TU1603513 other upstream 683634 68289515 ~ 68290086 (+) False G1404105
TU1602989 other upstream 1196229 67773556 ~ 67777491 (+) True G1403655
TU1602769 other upstream 1234018 67738962 ~ 67739702 (+) True G1403463
TU1604245 other downstream 103682 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 239513 69245545 ~ 69253709 (+) True G1404785
TU1604359 other downstream 299664 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other downstream 299664 69305696 ~ 69312263 (+) True fkbp1ab
TU1604386 other downstream 358489 69364521 ~ 69369376 (+) True G1404827

Expression Profile