RNA id: XM_036947659.1



Basic Information


Item Value
RNA id XM_036947659.1
length 989
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110492636
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69113016 ~ 69123466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacagacagacagacagacagacagagtattaCTCTTGCAATTCAAACAAATCTCCAAAATTAGCTAGTATTCCCAGCCTTTCTGAATCGTCCCCTGGTTTTAGTTTAGTCTAAACCTGGAGTGGGGGGCTATAGTGTAATTAAGGACGCTTTCCCATATCCCCTGTATGATCCTGGAGCGTTCGGTACCCTGATCCGCGCTATAAAGAATATGTAAAACGGAAACGAATCCTGGACAATACCTGGGCTGTGGATTCAAGATTTAGGACCAGGGTAGCAGGTGGACCAGGGTAGCAGATGCTTCACCTGACAGCAGGACGAGTCGGGGGCTTGTTTTCCAGGCGCGCGGTGGTGGGACTGACCAACAGTGGTGCGAGGATGTCAAGCCACCACGAGGTATCTGACCAGGTGGACATGTCCCAGCCAATGTACTGGGATCGTCTGGACACCCCTCTGCCAGACAGAGCATGGATTGATGTCCTTGATTCTAAGGATAAGAGTCTGAAACAGAAGGAGAAGGGGCCATGGACTGCACTGTCCAAGGAGGAAAAAATTGCCTTGTACAGGCTGAAGTTCAACCACACCTACCCTGAGATGAAGAAGCCGTCCCATGAGTGGAAGACCGTGATTGGTGGGATGTTCATCTTCTTTGGCATCACTGGTCTGGTGGTGTTTTGGCAGGGCCACTATGTGTACCCACCTCAACCTCACACTTTTGGTGAGGAGTGGCAGGCTAAGCAGATCCAGAGGATGCTGGACATGCGGGTCAACCCAATTGAGGGCTTTTCTGCCAAGTGGGACTACAAGAACAAACAATGGAAGTAAATGAAGTAATGGAATGGACGGGATACTGTACTGAAATGAGGAGCGGTTGGACTTGACAACACCTTGAGCCTCTGTTTAGCCAACAGCCTCTCCTTCCACCATAGTGGCAAGCTACCCATCTGAatccatccccatactgtttaagtaaaaaattacaaaaaacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1604525 lncRNA downstream 4587 69108055 ~ 69108429 (-) True G1404937
TU1604517 lncRNA downstream 19246 69092641 ~ 69093770 (-) True G1404930
TU1604505 lncRNA downstream 36021 69074063 ~ 69076995 (-) True G1404920
TU1604506 lncRNA downstream 38496 69071027 ~ 69074520 (-) False G1404920
TU1604481 lncRNA downstream 77009 69035130 ~ 69036007 (-) True G1404898
TU1604537 lncRNA upstream 4808 69127460 ~ 69127726 (-) True G1404944
TU1604547 lncRNA upstream 52045 69174697 ~ 69244266 (-) True G1404952
TU1604557 lncRNA upstream 63091 69185743 ~ 69186013 (-) True G1404962
TU1604579 lncRNA upstream 95181 69217833 ~ 69219097 (-) True G1404981
TU1604614 lncRNA upstream 140462 69263114 ~ 69264104 (-) True G1405006
XM_021567055.2 mRNA downstream 195590 68915576 ~ 68917426 (-) True LOC110492630
XM_021564517.2 mRNA downstream 216896 68894981 ~ 68896120 (-) True LOC110491168
XM_036945858.1 mRNA downstream 319688 68791313 ~ 68793328 (-) False LOC118939478
XM_036947619.1 mRNA downstream 340763 68703920 ~ 68772253 (-) False LOC110492626
XM_036947620.1 mRNA downstream 340763 68703940 ~ 68772253 (-) True LOC110492626
XM_036945796.1 mRNA upstream 231850 69354502 ~ 69379181 (-) True LOC110492644
XM_036947667.1 mRNA upstream 347764 69470416 ~ 69506016 (-) True LOC110491170
XR_005036611.1 mRNA upstream 449201 69571853 ~ 69575843 (-) True LOC118939576
XM_036947670.1 mRNA upstream 455022 69577674 ~ 69641848 (-) False LOC110491172
XM_036947672.1 mRNA upstream 455022 69577674 ~ 69666016 (-) False LOC110491172
TU1604092 other downstream 317991 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 1668837 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2618349 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2686694 66425551 ~ 66426322 (-) False G1402686
TU1604570 other upstream 80634 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 155175 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 395103 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 956005 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 1097225 70219877 ~ 70221256 (-) True LOC110492660

Expression Profile