RNA id: XM_036947666.1


Basic Information

Item Value
RNA id XM_036947666.1
length 2248
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110492642
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69313323 ~ 69347555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGCAACAGCTGATGGGCGGTCATTGGTTGTGTCACCGCCTCTGATTGACTTGGGTTTTCTAGACCAGGACATTAGCGGTGACTCGGAATATCACTTCTCAACAGCGGCGCTTTCGTCCCAAGTACGAAGCAGAAAAAGGAGTATAGTAACTAAAAGTCtgagttttttttctccccccctGAGACATTCACCATCAAAAACTTTTAAGAATGTCGCTGTATCCATCCCTCGAGGATCTTAAGGTGGACAAGGCCATGAAGGCTCAGACCCAATTGGCCCATACCACTGCTACCCCAGCCATCGCTGAGGGGACCTACCAGCCGCAGGCTGCTGTGCTGGGGATGCCATCATCAGGGGAGTCCACCGGCTTCTCCCTGTACCCTAACCTGGAGGAGCTGGGAGAGTACATGGGCCTGAGCCTCGACAGTGATGAGGTGCAGAGGAACATGGCCTCGGTGCCCATGGCAGACAATcaAGTGGCGGTGTCCTCTGGCATGGGAATCAGTGGCATGGTGTGTCCCGTGACGGGGTCAGACGTGGGCATCAAGAGGGCAGAGATCCGTCCCGGCCTGCGTGAGATCATCCTCTGTAAGGACCAGGATAGGAAGGTCGGCCTGAGGCTAAGAGCCATCGACAATGGCGTGTTTATCCAGCTGGTTCAGGCCAACTCCCCGGCCGCCCTGGGGGGCCTGCGCTTCGGGGACCAGGTCCTCCAGATCAACGGGCAGAACTGTGCTGGCTGGAGCCTGGACAAGGCCCACAAAGCCCTGAAGGTTGCTGCGGAGACCCGCATCGAGCTCATTGTCCGGGACAGGCCGTTCCAGCGTACTGTCACCATGCACAAAGACAGCTCAGGCCACGTTGGGTTCATCTTCAAGTCGGGCAACATCACCTCGCTGGTCAAGGATGGTTCGGCCGCTCGCAACGGCCTGCTGACGTCCCACTACATCTGTGAGATCAACGGACAGAATGTTATCGGCCTCAAGGATGCTCAGATCAAGGACATCCTGACCACCTCTCCTACAGCCATGACCATCACCATCATGCCCAAGTTCATCTACGAACACATGGTCAAGAGAATGTCCAGTGGTCTGCTGCGTTCAGCCATGGACCACTCTGTGCCAGAGGTGTGAAGGCCGGAACGTGACCACGTCTCCTACAGGATGCCTACAATCTCCAGAGTTCCCATTGGGCCCCCCAAAACAGCCAATAGGGTCAACTCGCTCTCTGTACTGAAAAACTTATTGTATCACAGTCACCGCCTTCGTCTTTCATCGTAGCATAATCTAAATATACCTTCTCTTTTTTTTTCCTCCGATGGCTCAAATAGTGTTATTCAATGTAGCTCCTTTTCTACTTCTATCCCTTTTGTCTGTTTTTACATAACTCTTGTAGTCCAGTATTGTTTTCTTATAATTATGTTTGTGGCATTGCATTGAGTACACCTTTTTGTTTTAAAGCCATGCGCACTATCATGAGTCCAGAGCGTCCTCATAAAGAGCAAGTTAATGGTTCATTGGCTCGTGACCTTTCACCTTTTGTGTCAAAATGCTGTAAAAGCCAATGATCTCCATGGTCGTTGATCATAAGCCTGTTCCCCTTATGCAGCTGGGACATTACGCTGGGCGGACCCACTAAGTGCACTTTCCTGTAaccattaaaatgttttatttttattgatcCAAGTCGAGTCAAAATTAACTGGGAATGGATTTGTTTGCACAAAGTAATCAAGAAACTGAAGTTATTAATATGTACGTTATCTAGGGGTTCAATCAATCATTCCCTCTACTTGTTGATTGATGTGCACGGCAAGACGGAAAACGTGACCTGGGCTCAGAATCGCAAAACATTTCTCACGCAAAAACTTAAGAAACAAAAGCATTAACATTTCCAGTGACCTTTttgaggaatagcaactttgcttaACTCTCTTCATAAGTCTATAGTTTAAGGGAAGACATttcttcttaatgttttgtgaatctgggccctgATCGGTGAGTTTCTTCTTAATATTACAATGTTGTTCTTGTTTGGAAGCGTGTTTTGTATTGCATTTTTATATCATCTTTAATAAACAACACACAGCCATCGTTCTGTAAATGCTAGAATCTAAATGTTTCTATACGAATGTAAAGGGGGAAGGGagacacctagtcagttgtacaactgaatgcatttaacACAACCCCTTCATaattaatgtaaaaacaaataaataataattttgtTCATATTTTAAA

Function

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0001666 response to hypoxia biological_process
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding molecular_function
GO:0045545 syndecan binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604367 lncRNA upstream 96 69313013 ~ 69313227 (+) True G1404810
TU1604355 lncRNA upstream 27625 69285284 ~ 69285698 (+) True G1404799
TU1604351 lncRNA upstream 39037 69273622 ~ 69274286 (+) True LOC110492915
TU1604349 lncRNA upstream 41438 69271639 ~ 69271885 (+) True G1404793
TU1604309 lncRNA upstream 138091 69174612 ~ 69175232 (+) True G1404756
TU1604364 lncRNA downstream 4013 69351568 ~ 69354055 (+) True G1404807
TU1604392 lncRNA downstream 30717 69378272 ~ 69378569 (+) True G1404832
TU1604400 lncRNA downstream 43903 69391458 ~ 69412846 (+) True G1404839
TU1604699 lncRNA downstream 82770 69430325 ~ 69431433 (+) True G1405082
TU1604742 lncRNA downstream 121494 69469049 ~ 69470157 (+) True G1405118
XM_021567074.2 mRNA upstream 1119 69305670 ~ 69312204 (+) False fkbp1ab
XM_021567073.2 mRNA upstream 7931 69289013 ~ 69305392 (+) False LOC110492640
XM_036947664.1 mRNA upstream 7931 69289013 ~ 69305392 (+) False LOC110492640
XM_036947665.1 mRNA upstream 7931 69289013 ~ 69305392 (+) True LOC110492640
XM_021567070.2 mRNA upstream 31708 69277801 ~ 69281615 (+) False LOC110492639
LOC118939480 mRNA downstream 80505 69428060 ~ 69428841 (+) True LOC118939480
XM_036947673.1 mRNA downstream 345467 69693022 ~ 69696403 (+) False LOC110492656
XM_036947674.1 mRNA downstream 345467 69693022 ~ 69696403 (+) True LOC110492656
XM_036947679.1 mRNA downstream 638622 69986177 ~ 69996398 (+) False LOC110492659
XM_036947675.1 mRNA downstream 638625 69986180 ~ 69996398 (+) False LOC110492659
TU1604359 other upstream 1060 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other upstream 1060 69305696 ~ 69312263 (+) True fkbp1ab
TU1604341 other upstream 59614 69245545 ~ 69253709 (+) True G1404785
TU1604245 other upstream 199973 69109714 ~ 69113350 (+) False G1404700
TU1603714 other upstream 631346 68681446 ~ 68681977 (+) True G1404281
TU1604386 other downstream 16966 69364521 ~ 69369376 (+) True G1404827
TU1604866 other downstream 233174 69580729 ~ 69583626 (+) False G1405216
TU1604867 other downstream 233812 69581367 ~ 69583626 (+) False G1405216
TU1604868 other downstream 234978 69582533 ~ 69583626 (+) True G1405216
TU1604870 other downstream 238434 69585989 ~ 69586906 (+) True G1405218

Expression Profile