RNA id: XM_036947667.1


Basic Information

Item Value
RNA id XM_036947667.1
length 1791
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110491170
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69470416 ~ 69506016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGTACTCTCACCTTCCCGCTTTTACGCGAAAACACTACATGTGTTTTCTCAACGGGATTTTAATATAGTGCGGTGTTTCTGCAGATGCAGAAAAAAACAGGTTATTGACATTACACAATATGGAGCTGAATTTTACACAGAGAGGGCGCGACATTCTAGAGTTACGCGCGCTGGCGCAGAAACTTCTGACTCGGGGGAACAACTACTCTCTGCGTCTGGAGAACTACTCTCTGTTTGACAACGGATCGGAGCTCGATCAGGAGGACTCATTGGACGTCAACACTAACATCTACTCTAAGGTCCTGGTCACTGTGATCTATATCGCGCTCTTTGCCGTCGGCTGCTTAGGGAACTCTGTTACGCTATACACCCTGGTGACCAAGAAGTCCCTCCAGAATATCCAAAGTACTGTCCACTACCACCTGTCCAGTCTCGCCGTCTCCGACCTGCTAATACTAGTCCTCAGCATGCCCGTCGAGCTATATAATTTCATCTGGGTCCATCATCCTTGGGCGTTCGGAGGAGTTGTTTGTAAAGGCTACTATTTCATTCGGGATGCCTGCTCGTATGCCACGGCGTTCAACATCGCCAGCCTCAGCGTCGAGCGTTATATGGCGATATGCCACCCTTTCAAGGCGAAGAGCATCATGTCCTGCAGCCGCACCAAAAAGCTGATCAGCGGGATGTGGGTGGCTTCGTTTCTCCTGGCCTCTCCGATGCTCTTCACCATGGGACAGAAGTATCATGGACCccaacgggagaagatatgcacCACCATCGTGCCTCCTGTCGTATTGAAGATAGTGATTCAGGTGAATGTGTTCCTGTCCTTTGTGGTTCCCATGGTAGCCATATCTGTTCTGAACGGGGTCATCGCCAGTCAGCTGCTGCATATGTTCAGAGAGAAGCAGCAGGACAACCGCATCTGCATCGTCGAGGGTAACCCTACCATGCTGAGCGTTGCTGTGGAGCCAAACCGCACACAGTCGCTGCGTCATGGAGTCATGGTTCTACgggctGTGGTTGTTGCCTTTGTGGTTTGCTATCTACCCTACTACATCCGGCGCCTCATGTACTGCTACGCAGAGTTTACAGAGGAAGGATATGATTACTACCACTACTTCTTCATGGTGACCAACGTCCTCTTCTACGTGAGCTCAGCTGTCAACCCAGTCCTCTACAACCTGGTCTCAGCCAACTACCGGGAGATCTTCTTCAACACGCTCCGCTGCTTCTGCGTGCCGTGTCGTCGCAAGAAACAGAGCCGTGTTCTGATCAGACACTCCACCAGCATCTCCAGTAACCACACCTTCTCCTCCAACATCATCAAGGAGACCGTCTACTgaccaccccccccaaaaaaaacactcCCCTGATAACATTCCATTTTAGAACTGCAGTGTATGGAATCTATTACCCAGTTGGACTCCATGTATGTTTGATGGGGAGCCTGGTACTGTGAATCACTGACACATTGTgccacataaacacacaaacaaatatcCACAATTTGATATATTGGTGCAATCatctgaaagaaagaaagaataagGGCGTAGATCactcaaattacaaaatgacattgGTTTCCTGTAAGCAGTCAATGGAcgaggtatgacagcaatccatgctttggctTAGTTTTCACATGCTAACAATTTAGCATTTGTTAGCACATTCAATTCATGGGACCGATATTAGCATTTGTCGTGCATCGTGTTCAAATCGTATGTCTGACTTTGTTGAGATATACAATCAATTTTGGGCACTTTTGAACATGATGTGCAAA

Function

GO: NA

KEGG:

id description
K04211 NTSR1; neurotensin receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604774 lncRNA downstream 1540 69468357 ~ 69468876 (-) False G1405138
TU1604771 lncRNA downstream 1540 69468418 ~ 69468876 (-) False G1405138
TU1604773 lncRNA downstream 1540 69468483 ~ 69468876 (-) True G1405138
TU1604727 lncRNA downstream 14960 69455186 ~ 69455456 (-) True G1405107
TU1604724 lncRNA downstream 20852 69449262 ~ 69449564 (-) True G1405104
TU1604833 lncRNA upstream 20693 69526709 ~ 69526933 (-) True G1405184
TU1604910 lncRNA upstream 40389 69546405 ~ 69588880 (-) True G1405252
TU1604926 lncRNA upstream 72525 69578541 ~ 69578866 (-) True LOC110491172
TU1604941 lncRNA upstream 106420 69612436 ~ 69619436 (-) True G1405281
TU1604955 lncRNA upstream 138003 69644019 ~ 69644846 (-) True G1405292
XM_036945796.1 mRNA downstream 91235 69354502 ~ 69379181 (-) True LOC110492644
XM_036947658.1 mRNA downstream 346950 69113016 ~ 69123466 (-) True LOC110492636
XM_036947659.1 mRNA downstream 347764 69113016 ~ 69122652 (-) False LOC110492636
XM_021567055.2 mRNA downstream 552990 68915576 ~ 68917426 (-) True LOC110492630
XM_021564517.2 mRNA downstream 574296 68894981 ~ 68896120 (-) True LOC110491168
XR_005036611.1 mRNA upstream 65837 69571853 ~ 69575843 (-) True LOC118939576
XM_036947670.1 mRNA upstream 71658 69577674 ~ 69641848 (-) False LOC110491172
XM_036947672.1 mRNA upstream 71658 69577674 ~ 69666016 (-) False LOC110491172
XM_036947669.1 mRNA upstream 71658 69577674 ~ 69666017 (-) False LOC110491172
XM_036947671.1 mRNA upstream 88995 69595011 ~ 69666015 (-) False LOC110491172
TU1604630 other downstream 190057 69277827 ~ 69280359 (-) True G1405016
TU1604570 other downstream 263258 69203286 ~ 69207158 (-) True G1404974
TU1604092 other downstream 675391 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 2026237 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2975749 66484901 ~ 66494667 (-) False G1402707
TU1604821 other upstream 11739 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 572641 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 713861 70219877 ~ 70221256 (-) True LOC110492660
TU1606185 other upstream 1229631 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 1754306 71260322 ~ 71260817 (-) True G1406514

Expression Profile