RNA id: XR_005036611.1


Basic Information

Item Value
RNA id XR_005036611.1
length 3859
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118939576
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69571853 ~ 69575843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctcaggatcacctggcgtctctctgctcaggatcacctggccctctctgctcaggatcacctggccctctctgctcaggatcacctggcgtctctctgctcaggatcacctggccctctctgctcTGGCTGAAAAACATTGTCACGTAAGGTGTTCAGGAAATGAAGGAGATGGGCAGTGTTGTATGGTTCAAGGGTGGCATGGCGGTGGAGGACCCCATTATGGCTCATGGCTGGGCATGTGGGGACATTTCCCCCGTGCTGGCCAGGCACCTTAATGATGGCGCGTTGACCAATGatgtcccttcctctcctcctcgacTTCACTAAATGGAATCCAGCCTCATCTATGAATGAGTTCCTGGGGGATGGGACTTGCGTCCATCTCCAtgattctctaaaatgacagaaAATACTATAATTGCTGTATGGTAAAGTTCACTGGCAACATCAACGAGTCTCTAATGTTTCTAGAGTGTAATACCAGAACATTACGCACACATTCCTACTATTTATCCTTCACTCTTCACTCAATCTGGTGATTCCTTTCCAATATGACTCTGTAGATGTGCTTCATCTGGAGATGGTGTTTGTTAAGGATGGGGTCTGTGGTTGATAAACTCTctctgatgttatggaagatgccAGGGTTACAGCCTCCTGTTTGTCTGTAAATAGACATGTACGTACGTGGTGGTCGTCTTTCAGTTCTATAACAACTAAAtagcatacagtacagtaaacactacagtaatacagtatacaagATAAACATGTTACAAAGTAGTATAGCTCCCAATTTCATACATACAGTAAGTAATACATGAACCATTTACTTTGTTTCCCTTTACAGTATGTATTGGAATCTACAGTCTTTACTGTGCTTTATGTTGTACTACTGTCAAGTAGTAAAAGTAGAAGAGAGGTCCAATGTCTGCAGTACAAACCTCTTCTCATTGTGGAACGTCCGGATGATGGATGCTACGGGGAAGTGGCTCAGATTGGGCTGCACTCTCTGCACAGCCTCTCTCAAggtcaaaccatggttgaccacatGGTCTGCCCAGCATCTCTCAAGGTCAAGCCATGGTTGACCACATGGtctgcccagcctctctcaaGGTCAAACCACGGTTGACTACATGGTCTGCCCAGCCTCTCAAggtcaaaccatggttgaccacatGGTCCACCACAGTCGCCGAGACTCTTGTTCTCCTTGTTCTTGGTCTTCCTTATTCCTCACCTCTATCTCCAACTCTCCCTGCTAAGTTTGCTTCCATTGTTCTCCAAACACAGGAGTACTCACCTGTGGTCTTGTTGTCCATACCAAAAGGTTTGAGTGCAAAGTTGAACATTTATGCAAATCGTGTTTGAACATGTGGAGAGTGAAAATGATCAATTGGTAATTGAGCTTAGCTTGTTGAACAGTGTTGCTTTTCATTTGAACACAAGAGATTTTAGTTGTCAAGGTTTTGCCAAAATGTTTTGCCAAATGTTGGTTATAGAATTTCAATCTGTGCCAGTAGTATTGCAGATTTGGTTTTCTGCTTCTGCTAAATGGGTTACATATTTGGGTCATTGTGCCTCATGGGCCAGTTTTAGTGTGTTAACAATTGGGAAAAACTGTCAGTATTATTTTGCAAACCCTGTGACAATGTGAAAGAAAACTATTCAAACTCAGGCTCAATGGTTGTTTCCCATAGTGACATTAAAGTAAAACTCCACACACAAACCATATTTTGGTATTTATTTagttagtccattgttgatataatCCTAAAATGTTTTGCacgtcagcaatcaagttttaaAGAAacataactttcaaaatacagaaatacagccggtatgatGCCATTTTAATTATATATTGCAAAACGCTGCATCATGTAATTCAAAATGCATCACAACGGCTGTATCTCCAAAAAGCGTTTCGGTGTCATTTTCCTTTAAGTGCTGAGAGGGAATGTATTTCATACTCATTCAGCTGTACTTATTGACAGTAGCCAGACACACAGATGTCCTGTATAACAAAATATTCATTAGGTCAACAGTTGACCCCAAAGCAAAGGCAACAATTTCCTAAATGATAGATAATTGTGGCACTATTGTAAGACCAGACACTGATAGAGACCATCATCTGGAATAGAAACAGAGTTTTAAAGGGTTTCCACAGACAAATATACCCTTCCCCATTACAGACAGTAGTCATCTACCCTTCCACTTTACAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCACTTTACAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTATAGACAGTAGTCATCTACCCTTCCACTTTACAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTATAGACAGTAGTCATCTACCCTTCCCTTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTAATAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTAATAGACAGTAGTCATCTACCCTTCCCCTTTATAGACAGTATTCATTGACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTATAGACAGTAGTCATCTACCCTTCCCCTTTATAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTATAGACAGTATTCATTGACCCTTCCCCTTTAAAGACAGTAGTAATCTACCCTTCCCCTTTATAGACAGTATTCATTGACCCTTCCCCTTTATAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAATACAGTAGTCATCTACCCTTCCCCTTTATAGACAGTATTCATTGACCCTTCCCCTTTATAGACAGTAGTCATCTACCCTTCCCCTTTACAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTCATCTACCCTTCCCCTTTAAAGACAGTAGTAATCTACCCTTCAGCATCAATATACCATTTAACAAAACAGTAGCCGTATATGaaggacccccccccctcctgattACCAGGTttgaggtcaattccatttaattcCCAGTTAATTCAGAAAGTAGACCAAATTCCAAATGGTCCTCATTGAAATACATTGAAGATAACTGGGATTTCAGTGCACATCCTTATATGACtgaaatttaaatggaattgacctccGGCCCCCCTGTTTACCACTAGCAAGATCAAAACGGTGAGTAACTCCATTACTCAGCCACACAAACATCAGAGCACACAACCCCTTCATACAAAACTGTGCGTTTTAATAGGATTTGAGACTGTCAAATGTGACCCGTTACTGTGTGGGGGGTATTCTGTTTCTTCTAATAGTTGGTGTTGTGAAGGATTTTCTGTGTATGTGAATCTGTTGTCATAAGCACCTTGCCTTGGTCCTCCAGATAGTGGTTCTGGATGGGGACAACAAGCACATTGTGAAGAAATGGCTTAGCAATGCAATCTTACTATAAGACTGAAAATAGTTTTTATGGGCAGAATTTGAATGTTTTTTAAACAAAATAAAAGTTGTAAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604833 lncRNA downstream 44920 69526709 ~ 69526933 (-) True G1405184
TU1604774 lncRNA downstream 102977 69468357 ~ 69468876 (-) False G1405138
TU1604771 lncRNA downstream 102977 69468418 ~ 69468876 (-) False G1405138
TU1604773 lncRNA downstream 102977 69468483 ~ 69468876 (-) True G1405138
TU1604727 lncRNA downstream 116397 69455186 ~ 69455456 (-) True G1405107
TU1604926 lncRNA upstream 2698 69578541 ~ 69578866 (-) True LOC110491172
TU1604941 lncRNA upstream 36593 69612436 ~ 69619436 (-) True G1405281
TU1604955 lncRNA upstream 68176 69644019 ~ 69644846 (-) True G1405292
TU1604960 lncRNA upstream 80879 69656722 ~ 69657089 (-) True G1405297
TU1605090 lncRNA upstream 96160 69672003 ~ 69673550 (-) True G1405401
XM_036947667.1 mRNA downstream 65837 69470416 ~ 69506016 (-) True LOC110491170
XM_036945796.1 mRNA downstream 192672 69354502 ~ 69379181 (-) True LOC110492644
XM_036947658.1 mRNA downstream 448387 69113016 ~ 69123466 (-) True LOC110492636
XM_036947659.1 mRNA downstream 449201 69113016 ~ 69122652 (-) False LOC110492636
XM_021567055.2 mRNA downstream 654427 68915576 ~ 68917426 (-) True LOC110492630
XM_036947670.1 mRNA upstream 1831 69577674 ~ 69641848 (-) False LOC110491172
XM_036947672.1 mRNA upstream 1831 69577674 ~ 69666016 (-) False LOC110491172
XM_036947669.1 mRNA upstream 1831 69577674 ~ 69666017 (-) False LOC110491172
XM_036947671.1 mRNA upstream 19168 69595011 ~ 69666015 (-) False LOC110491172
XM_036947683.1 mRNA upstream 551410 70127253 ~ 70133280 (-) True LOC118936543
TU1604821 other downstream 53740 69517755 ~ 69518113 (-) True G1405172
TU1604630 other downstream 291494 69277827 ~ 69280359 (-) True G1405016
TU1604570 other downstream 364695 69203286 ~ 69207158 (-) True G1404974
TU1604092 other downstream 776828 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 2127674 67443421 ~ 67444179 (-) True G1403498
TU1605761 other upstream 502814 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 644034 70219877 ~ 70221256 (-) True LOC110492660
TU1606185 other upstream 1159804 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 1684479 71260322 ~ 71260817 (-) True G1406514
TU1606849 other upstream 1926636 71502479 ~ 71527677 (-) False G1406752

Expression Profile