RNA id: XM_036947673.1


Basic Information

Item Value
RNA id XM_036947673.1
length 1705
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110492656
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69693022 ~ 69696403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTTACTCTGAGAGCTGGTGGGTACAGAGATCATTTCATGTGGAcatgagaggacagagagatctGCTGTGGATTTTACGTTACTGACCAATCAGGAGTGACAACGATGACAGCATCAGTCGTCAGCTCTCCCGTGTTTCACCCGGTGTTCATGGGTTTCCTGGCTCTGTCGAGCTTGGAGGGAGTGTTCACCTGTCGTCTAGGGACCCCAGAAGAATGCGCCAATTGTTCCTTTGTGCCTGGCTACAAACTGGCTGGGATGGGCTATGATGTCGTAACACTGAGACAAAAACGGGCCTCTGTGTTTGATGTCAACAGTTACTTGGCTAACTCCTGCATGGTATGTGTGAACCCACTTATGGGAGGTGAGCTTCAGAAACTCCCCTTGCATATGAAGGACTGGCGCGCAGAAAGTGACTGCAAGAGGAAGACTCTGAGTTCCTACTACTACTCTGTCAGCTCTCTTGTGGATGATATAGCCTTCTTTATAGCGAATGACTGGAAGGCGGGGCTAAAGCTGGAGAATGTAGACCTGCAGTTAGCAGGCAGCAAGTCCAAGGTGTACGGCTTTGCATCCGCACACTCAAACGCAGACAGGTCTTCCTTCTCATTTCAACAATTTACCTGCTCCGTCTACAGTTTCAGTGTACCCAGCAAACCCCCACTTAGCCTGGATTTCCAGCGACGCATAGCTTCTCTGCCACACCACTACACATCCAACAGTGAGGCGTACAAGGACATCATTGATACCTACGGAACCCACTACATCAGTGATGGAGACCTCGGAGGGATGATGAAGAGGGTGACTAGCATTCGCACCTGTCTAGCAGCCCTAAACAAGGTCTTTGTGTCCGACGTGGAGACATGTCTGAGTATGGGGTTGGACTTGGACATACCTGTAGGACTGCCCGTTGACTTAGGGCTAAACCTTTTGGGTGGACAATGTTCGAAGGTCGCTACCAACTCTGACAGTGCAACAGGGTACAGCATGGGCTTCTTAAGCCACCACACGGAAGTGAACGGTGGGAGAACCTTAAATGGAGTTGCTTCTATGAGAAAAGCTAATATAGATAGTTTCTTAAAATGGATGAAAAGCCTAAATGAGTTTCCGGAAATGGTATCCTTCTCCCTGCAGCCTCTATATCAACTGGTTGATGACAAACAGACGAGCGCTGATCTACAAACAGCTATTAGTCAGTATGTGATCGACAGCGGGATTAAGAGAATAAAGACAGAGAATCAAGCATGCAGGCATTCACCTGACCTTTCTGCTGATTGCTGCCCCCTGTTGGCAGGGAGAGGCAAACTAACAGTCTTTGTGGACCGTGGGTTTAGTCTAAGGGGCAATGGGATGGCCGAACCAGAGGTTTACGTCAAACTGTGGTGTTCAGGTCAGCACAGGCTGACCCGCTGGATCACCACCTATGATCCACTTTGGCATACACATTTCAACTTTAACTATGTAAACACCCAGTCCTCTCTAGAGCTCCAGGTGTGGGATAAGTCCCCAGGGGAACGTGACGATGACCTCCAGGGTGGGTGTTCTGTAAACCTGGAGCAGGGGAGCCACGTGCATAGCTGTGGACTCAGTAATGGGAGTTTCACATTCTCTTACACATTAACTTGTGACAAACACCTGACTGGTGATAAATGTGACCAATATTACCCCTCCCCAAACTAGAGGGGAAATCAGTGAAGAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604903 lncRNA upstream 40706 69649747 ~ 69652316 (+) True G1405245
TU1604887 lncRNA upstream 51065 69625928 ~ 69641957 (+) True G1405233
TU1604897 lncRNA upstream 53389 69638510 ~ 69639633 (+) True G1405240
TU1604864 lncRNA upstream 119919 69572402 ~ 69573103 (+) True G1405214
TU1604853 lncRNA upstream 150634 69542174 ~ 69542388 (+) True G1405203
TU1604992 lncRNA downstream 2454 69698857 ~ 69699511 (+) True G1405325
TU1604999 lncRNA downstream 7779 69704182 ~ 69704394 (+) True G1405331
TU1605014 lncRNA downstream 42493 69738896 ~ 69768630 (+) True G1405344
TU1605020 lncRNA downstream 51324 69747727 ~ 69748528 (+) True G1405349
TU1605024 lncRNA downstream 61464 69757867 ~ 69759009 (+) True G1405352
LOC118939480 mRNA upstream 264181 69428060 ~ 69428841 (+) True LOC118939480
XM_036947666.1 mRNA upstream 345467 69313323 ~ 69347555 (+) True LOC110492642
XM_021567074.2 mRNA upstream 380818 69305670 ~ 69312204 (+) False fkbp1ab
XM_021567073.2 mRNA upstream 387630 69289013 ~ 69305392 (+) False LOC110492640
XM_036947679.1 mRNA downstream 289774 69986177 ~ 69996398 (+) False LOC110492659
XM_036947675.1 mRNA downstream 289777 69986180 ~ 69996398 (+) False LOC110492659
XM_036947676.1 mRNA downstream 290696 69987099 ~ 69996398 (+) False LOC110492659
XM_036947677.1 mRNA downstream 290696 69987099 ~ 69996398 (+) True LOC110492659
XM_036947680.1 mRNA downstream 346845 70043248 ~ 70069326 (+) False LOC118939577
TU1604973 other upstream 20348 69671464 ~ 69672674 (+) True G1405310
TU1604870 other upstream 106116 69585989 ~ 69586906 (+) True G1405218
TU1604866 other upstream 109396 69580729 ~ 69583626 (+) False G1405216
TU1604867 other upstream 109396 69581367 ~ 69583626 (+) False G1405216
TU1604868 other upstream 109396 69582533 ~ 69583626 (+) True G1405216
TU1605337 other downstream 433518 70129921 ~ 70132301 (+) True G1405605
TU1605451 other downstream 560419 70256822 ~ 70257430 (+) True G1405676
TU1606344 other downstream 1273212 70969615 ~ 70972604 (+) True G1406381
TU1606401 other downstream 1506039 71202442 ~ 71206092 (+) True G1406424
TU1606505 other downstream 1513869 71210272 ~ 71210764 (+) True G1406505

Expression Profile