RNA id: XM_036947682.1


Basic Information

Item Value
RNA id XM_036947682.1
length 3314
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110492652
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70096449 ~ 70111837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaattgcTGTCACTAGGTGacactagctaactagctagcactCTCAACACATTTTGATGCTAATGGGGATCACGTGACGTCACGAATGACACGTGTATTCAAGATGGCGGCCGCGGCGATGGAGACGTGGTTGGCCCTGCTGCTGTTGTCCATGTTGCCTGGAGGGGTCCAGCCCTTTTACGTGCCTGGAGTTGCTCCTATGAACTTCCACCAGAACAGTGCTGTAGAGATTAAGGCCGTGAAGCTGACCAGCTCCAGGACTCAGCTTCCCTATGAATACTACTCCCTGCCCTTCTGTCAGCCTGATAAAGTGGTCTACAAAGCAGAGAACCTGGgggaGGTGTTACGTGGGGATCGTATTGTGAACACCCCCTACTCGGTACTCATGACCCAGGACAGGAAGTGTAAGGTGGTTTGTGCCAAGCTGAAACTCAACGTGCAGCAAAGCAAGCTGGTGGCTGAGCGCATCCAGGAAGAGTACTATGTTCACCTCATCGCAGACAACCTCCCAGTGGCCACGCGACTGGAGTTCTACCCCAAcaaagaggcagaggaggagaaggatgtGGTGAAGGATGTTCAGTTTGAACACGGCTACAGACTGGGCTTCACTGAGAGCAGCAAGTTCTACCTTCACAACCACCTGTCTTTCATCATCTACTACCACAAGGAGaagctggaggaggaggaagagcacAACTACAGAGTTGTACGTTTTGAGGTGGTTCCCCAGAGTGTGAAGGTGGAGGACCTGAAGGCTGATAAGGGGTTGTGTACCCTGCCTGAGGCCACTAACTCAGCTCCTCAGGAGATTGACCCCTCCAAGGAGAATGAGGTTCTCTTCACCTACTCTGTCCGCTGGGAGgaGAGCCAGGTGAAGTGGGCATCTCGCTGGGACACCTACCTGACCATGAGTGACGTGCAGATCCACTGGTTCTCCATCGTCAACTCAGTGGTGGTGGTCTTCTTCCTCTCTGGGATCCTCAGTATGATCATCATCAGGACCCTGAGGAAGGACATTGCCAACTACAACAGAGAGGATGACATAGAGGACACCATGGAGGAGTCGGGCTGGAAGAATGTCCATGGTGACGTGTTCAGACCTCCACAGTATCCCATGATCCTCAGCTCTCTGCTGGGCTCTGGCATACAGCTCTTCTGCATGATTCTCATCGTCATCTTCGTGGCCATGTTGGGGATGCTGTCTCCTTCCAGTAGAGGGGCCCTGATGACCACTTCCTGCTTTCTGTTCATGTTCATGGGTGTGTTCGGTGGATACTTCGCTGGCAGACTCTACCGCACCCTGAAAGGTCATCGGTGGAAGAAGGGTGCTTTCTGTACGGCCACTCTGTACCCGGCTGTGGTCTTCTCCATCTGCTTCGTCCTCAACTGTTTCATCTGGGGAGAGCACTCTTCTggagctgtccccttcaccaccatgCTGGCTCTACTCTGCATGTGGTTCGGTATCTCCATGCCGCTGGTCTACTTGGGCTACTACTTTGGCTTCCGCAAGCAGCCGTACGATAACCCCGTCCGCACCAATCAGATCCCTCGCCAGGTGCCTGAGCAGCGCTGGTACATGAACAAGTTTGTGGGAATTCTGATGGCTGGGATTCTACCGTTTGGTGCCATGTTCATTGAACTCTTCTTCATTTTCAGTGCCATCTGGGAGAACCAGTTCTACTACCTGTTTGGTTTCCTCTTCCTGGTGTTCATCATCCTGGTGGTGTCCTGCTCCCAGATTAGTATCGTCATGGTCTACTTCCAGCTCTGTGCGGAGGActaccggtggtggtggaggacctTCCTGGTATCAGGGGGCTCAGCCTTCTACGTTCTTGTTTACGCCATTTTCTACTTTGTCAACAAGCTGGACATCGTGGAGTTTATTCCTTCCCTGTTGTACTTTGGCTACACGGCTCTCATGGTCCTGTCCTTCTGGCTCCTTACAGGGACCATCGGTTTTTACGCAGCGTACATGTTCATACGGAAGATCTACGCTGCCGTCAAAATCGACTGAGTTTGTTTCTGctgcttttctttattttttgttgCCACATTTTCTTGTTCGGTTTTAATTTTTGTCTTCTTCGTGTCCAGCAAACACTGACTTCTGTGTATGGAAGGAAGGAAGCATGAGGTGGGTTTTGTGGAACAGTGCCACCCACAGGCATAGGGAGAGAACAGCAAGATGATGCTGCCTGCTAGCTCGacgctccccccctccctccgttATTGGTGTCCACAGAGACAGAGTTCCTCTGGGACAGTCCATGTTTTTCCTGTGGTTCACCTTGGACGCAACATGGGCCAAAGCATGTCAATTGAATTGAGTCTCTGTGTGTTTTAGTGTCTCTGCTTTTTTTGGAAGTTGGACAATCAATGAAGTGCATTGGTTCAGAACTTCACTTCGTTTTAAAATCAGTTCTCTGTAAAGATGTTTTAGTCTGACCTatgtctctgtttctttctcgctctctctgtctttcggtctctctgtgtctgtcggtctctgtgtgtgtgtgtctctctgtctgtgtgttagttAGTAAGGTTAGTTTATTTGAGTTTATAATCTTTATTCCAGATGGTTGGGAGGTCACATGGTGGTAATGGCACTAAAAATTATTTTGTTTAGTTTGGAAATGGAAATGTGACATTGGAACAAGGATATTACAGTATTCTGTTTTTATTGCGGTTTCCATGTCCTGATGTGACCATTTCAACCACAACTAAAAAAATCAGAATCtaaatgtttttcctggagagagaAAACAATCTCTCACATTGAGGTAACCGATTGTGTAAAAGGAAATTCTCCTCCGTGATCAATTAATCTGATGTTGCTAGGGAAGTCGAGGCTTAAGGTGGTTTTAAATATTAAATGTTatggaacaaaaaaaaaagtcaatGTTGATGGAAAAGTAGCATTTCTCATCTTCAAATCACCTTTTCTAGTTTATGAGCTTTAGCCTTAGGGAAAAACGACTTGTTTAAAAACGGTTGGACACCATTACATTACGAGTCAATGTAAACAGCTCCATGGTCTCACTGAACTATGCattttttttgaggggggggAGGGGTGAGATTGATGTTTTGTTTTGAACACCTAGTTCAGTGAGACACACCTGCTATTCTAACAGAAGTTATCGGTGTCGGGTTATCCCTGAGCATCAATGTCTCTACAAGGATCGCCTTAGCAACACAGAGTTCTGTCAATGAGCCTCTGAATGGAGCACAGTTGTTTCCCATAAACAACCTCTAAATTAAGGACGCTTGTGTTTCCCATAAACAACAGGCCCAATCA

Function

GO: NA

KEGG:

id description
K17086 TM9SF2_4; transmembrane 9 superfamily member 2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1605308 lncRNA upstream 42822 70052589 ~ 70053627 (+) True G1405584
TU1605285 lncRNA upstream 59246 70034464 ~ 70037203 (+) True G1405575
TU1605277 lncRNA upstream 78443 70017481 ~ 70018006 (+) True G1405569
TU1605252 lncRNA upstream 130682 69965546 ~ 69965767 (+) True G1405545
TU1605247 lncRNA upstream 137576 69958066 ~ 69958873 (+) True G1405540
TU1605328 lncRNA downstream 12333 70124170 ~ 70125683 (+) False G1405603
TU1605330 lncRNA downstream 12333 70124170 ~ 70125683 (+) False G1405603
TU1605331 lncRNA downstream 12333 70124170 ~ 70125683 (+) False G1405603
TU1605332 lncRNA downstream 12333 70124170 ~ 70125683 (+) True G1405603
TU1605336 lncRNA downstream 14504 70126341 ~ 70128867 (+) True G1405604
XM_021567092.2 mRNA upstream 1182 70078693 ~ 70095267 (+) True LOC110492657
XM_036947680.1 mRNA upstream 27123 70043248 ~ 70069326 (+) False LOC118939577
XM_036947681.1 mRNA upstream 27123 70043248 ~ 70069326 (+) True LOC118939577
XM_036947675.1 mRNA upstream 100051 69986180 ~ 69996398 (+) False LOC110492659
XR_002469055.2 mRNA downstream 79955 70191792 ~ 70194430 (+) False LOC110492666
XR_002469054.2 mRNA downstream 80011 70191848 ~ 70194430 (+) False LOC110492666
XM_021567080.2 mRNA downstream 86601 70198438 ~ 70212716 (+) False LOC110492650
XM_036947686.1 mRNA downstream 86625 70198462 ~ 70212716 (+) False LOC110492650
XM_021567090.2 mRNA downstream 268492 70380329 ~ 70394365 (+) False LOC110492655
TU1604973 other upstream 423775 69671464 ~ 69672674 (+) True G1405310
TU1604870 other upstream 509543 69585989 ~ 69586906 (+) True G1405218
TU1604866 other upstream 512823 69580729 ~ 69583626 (+) False G1405216
TU1605337 other downstream 18084 70129921 ~ 70132301 (+) True G1405605
TU1605451 other downstream 144985 70256822 ~ 70257430 (+) True G1405676
TU1606344 other downstream 857778 70969615 ~ 70972604 (+) True G1406381
TU1606401 other downstream 1090605 71202442 ~ 71206092 (+) True G1406424
TU1606505 other downstream 1098435 71210272 ~ 71210764 (+) True G1406505

Expression Profile