RNA id: XM_036947688.1


Basic Information

Item Value
RNA id XM_036947688.1
length 1560
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110492660
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70216538 ~ 70221552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGCAAATCAAAAGGTGTTTGTCATCTGCTCCGAATACAGCAGGCAACCCATTaataaaccaacaatgcagttttaagaaaatatagtTAAGAAAAATATGTAATAAATTAACTTaagtaaaaaagtaacacaataaaaataacgaggctatcggtacagATAAAGGCTCAGAagtttccccttctctctcgccAGTCAAGATGGGAGGAGCTGTGAGCGCTGGCGAGGATAATGACGAGTTGATTGACAACCTGAAGGAGGCACACTACATCCATTCAGACCTGGTGGAGCGGGCCTTCAGGGCCATCGACCGGGCCGACTACTACCTGGAGGAGTACCGTGACAGTGCCTACAAGGACCTGGCCTGGAGGCACGGCAACATCCACCTATCAGCCCCCTGTATCTACTCTGAGGTGATGGAGGCCCTGGACCTGCACCCTGGCCTGTCCTTCCTCAACCTGGGCAGTGGGACGGGGTACCTCAGCACTATGGTGGGACTCATACTGGGTCCATTTGGTGTGAACCATGGGGTGGAGTTATATGCTGATGTGATTGAGTATGCCTATCAGAAGCTAGACTACTTCATCAAAACCAGCGAAAGCTTTGACAAGTTTGAGTTCTGCGAACCTTCGTTTGTGGCGGGGAACTGCCTGGAGATCCCCCCTGAGAGCAGGCAGTATGACAGGGTGTACTGTGGCGCGGGAGTGCAGAGAGACCATGAAGAATACATGAAGAACCTGCTGAAGGTGGGGGGTATTCTGGTACTGCCtctggaggagaagCTGACCAAGATCAGGCGTACAGGCCAGAGCAGCTGGGAGACCAAAAAGATCATTGCTGTGTCCTTCGCTCCACTGGCACTGCCCCAACATAACACCAATGGTGAACCCAAGACAGTCCCACTACCCACGTTTGAGGTGCGGACGCTGCAAGAGCTGGCTCGTATAGCCATCCGCCACACCCTGAGAGTGACCACGGACAACGGGGGGGGTCAGCCACGGGGTCGGGGCTCTTTTGGAGGAGGCAGGGGCCTGGGGGTCAGTGGGCTCCACAAGTACGGCCCGCGTTTTAAACGCCGGCGAGTTCACCACCGCCGCCACTGCACCTCTGTAGTACTGGCACACAAGCCTGTGGTGAGCAATGCTGACCCCACCCCTGCTCccctggacaacaacaacaataaccacGGGGGGCAGGAGGATGGGCAGCGAAGGGCAGcccgggaggaggaggaggaggaggaggaagcagaAAAGGAGACAGGGGAGCTACTCCCAGCAGAGCCACCTATAAACATCCTGAGAGAAAGGATTCTCGTTTTGCCCCTCCCGGAGCCTCTGAAGATGTACCTGCTGTACTGCCGGGAGAAATGACTTTTCCACAGATGCAGCACCCAGCAGAAACCAACAACCCctgactgggtctctgtctctgactgggtctctgtctctgactgggtttctgtctctgactgggtctctgtctctgactgggtctctgttaCTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTACTGACTGGGTCTCTGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1605838 lncRNA downstream 78802 70137387 ~ 70137737 (-) True G1405958
TU1605777 lncRNA downstream 81439 70134770 ~ 70135100 (-) True G1405919
TU1605795 lncRNA downstream 90245 70126051 ~ 70126294 (-) True G1405933
TU1605775 lncRNA downstream 102658 70112899 ~ 70113881 (-) True G1405918
TU1605774 lncRNA downstream 102846 70112899 ~ 70113693 (-) False G1405918
TU1605888 lncRNA upstream 1610 70223162 ~ 70226004 (-) True G1405985
TU1606013 lncRNA upstream 168056 70389608 ~ 70394300 (-) True G1406075
TU1606033 lncRNA upstream 230683 70452235 ~ 70453318 (-) True G1406091
TU1606039 lncRNA upstream 232335 70453887 ~ 70456223 (-) True G1406097
TU1606041 lncRNA upstream 234142 70455694 ~ 70552795 (-) False LOC118939579
XR_005036612.1 mRNA downstream 28681 70185375 ~ 70187858 (-) True LOC118939578
XM_036947683.1 mRNA downstream 83259 70127253 ~ 70133280 (-) True LOC118936543
XM_036947669.1 mRNA downstream 550522 69577674 ~ 69666017 (-) False LOC110491172
XM_036947672.1 mRNA downstream 550523 69577674 ~ 69666016 (-) False LOC110491172
XM_036947692.1 mRNA upstream 8287 70229839 ~ 70279020 (-) False LOC110492649
XM_036947694.1 mRNA upstream 8287 70229839 ~ 70279020 (-) False LOC110492649
XM_036947691.1 mRNA upstream 8287 70229839 ~ 70282239 (-) True LOC110492649
XM_021567099.2 mRNA upstream 200877 70422429 ~ 70426034 (-) False tmed4
XM_021567100.2 mRNA upstream 202353 70423905 ~ 70426035 (-) True tmed4
TU1605761 other downstream 120998 70078657 ~ 70095541 (-) True G1405917
TU1604821 other downstream 698426 69517755 ~ 69518113 (-) True G1405172
TU1604630 other downstream 936180 69277827 ~ 69280359 (-) True G1405016
TU1604570 other downstream 1009381 69203286 ~ 69207158 (-) True G1404974
TU1604092 other downstream 1421514 68791189 ~ 68795025 (-) True LOC118939478
TU1606185 other upstream 514095 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 1038770 71260322 ~ 71260817 (-) True G1406514
TU1606849 other upstream 1280927 71502479 ~ 71527677 (-) False G1406752
TU1606887 other upstream 1307527 71529079 ~ 71545845 (-) False G1406752
TU1606851 other upstream 1313013 71534565 ~ 71544501 (-) False G1406752

Expression Profile