RNA id: XM_021567099.2


Basic Information

Item Value
RNA id XM_021567099.2
length 2224
RNA type mRNA
GC content 0.39
exon number 5
gene id tmed4
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70422429 ~ 70426035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacaaaaaaaagagtcGTTTGTTCGCGAACGACTCATCACTAGCATCTACTGCGCTGACTCTGCTGATGGTGACAACAAAGCTGTTTTGACATGATGCTCACTGTACCCGGCGCCGGAATTATCATATTATTTGCTTGGCTCTCTCCAAGTTACGCTCTCTATTTTCACATTGGGGAGACGGAGAAAAAATGCTTTATAGAGGAAATTCCAGATGAAACTATGGTTATTgGGAAATACAGGACCCAGCTGTGGGACAAGCAGACCGGATCGTTCCTCCCAGCCACACCTGGCCTTGGAATGCATGTGGAGATCAAGGATCCAGATACTAAGATCATCCTGTCTCGTCAGTATGGGTCAGATGGACGGTTCACCTTCACATCCCATACCCCGGGCGAGCATCAAATCTGCCTGCACTCCAACTCCACCAAGATGGCCCTGTTTGCTGGTGGCAAACTGAGAGTTCACCTGGATATTCAGGTTGGTGAGCATACCAACAACTACCCTGAAATCGCAGCAAAAGACAAGCTCACAGAGCTGCAATTGAGAGCTCGACAATTACTGGACCAAGTAGAACAAATCCAGAAAGAGCAAAACTATCAGCGGTATCGTGAGGAGCGGTTCCGCATGACAAGTGAGAGCACCAACCAGCGTGTGCTTTGGTGGTCGATAGCGCAGACGCTTATTCTCATCGTCACTGGCATCTGGCAGATGAAGCACCTCAAGAGCTTCTTTGAGGCCAAGAAGTTGGTGTAATGCTCTCAGGCCATCACTGATTGAGTTTAAGACCGGCATCACACCCATACAGAGTTGACTGGCAGAGAGACAAGGTGTTGATGTGATTTAGTAGATGCTTAAAAAGGGCAATTCCGCCACTTTCAACCTCAAGTGTACATATGTGAAACCAGCTCATTTGTGGTTAAATTGATAaggtcctaaaaaaaaaaaaaaaatgcttctctGTGGGTTAAAAATAAAAAGTGATTTTCCAAACCTGCAATTATTTTCTTGCTCCCCATGTCACCACAAATGTTTGAAAATCAGTTTTTAAAATGTTAACTTTTGATGTCATCAGGTAGAACTTCActtaaattgttttaaaataaACAAATGTGCCATTTCACATATGTCGACAATGGTATTATGCTGGAGATAAATGAGGTTGAGAAGTGGTGGAGTTGCCCTTTAAATGGGCAATCTGCAGCTGAAGGATAGGGCTGGAGAAATTTAACCACACTCAAATTTTTAGTCAAAGCTATACATTCCAAGGACTTGACCAACTTTGAGATCAaaattgtttacatttactttgtttataaACAATGAAGTAAAACAAGCTTTTATTTTAGGTTCTGATgaggtacaacagttgaactaagctcatcaGGCATTTGTAAgttattcaagaatcaatgggtacatattaaTTTGTAAGTCTAAAAAAATTtaacaactgcagattgccccttttaaaCCTGGGAAGCAAATGAATTGATGCCATCCAGTGCATTTTGTATTGTCCATTATTATTCCGTGATTTTAATTATTGTGTTAAGGAGTAAGCAGCACCTGTGTCCATGTTGTTGTATTAGGTCTACTGCTGTGTAGTTGTTGTATAAAACTGTGTTGGACTGTACATATAAGCAGTGGCAAAATTTTGAACTAAGCAGTCAGATCCACATTACTAGTATTTTGTAGATCTTGGTCTTTCtgaaaactgtattattttggtTTAAAACACTTGTATTTATTTGGACTATATTGTGTTTTAGTCTACTAACATGATTGTAACATAGCTAATAATAGGGATATCTTAATGACTAACCTGTTCACGCCCAAACACCAGTTCACAAGTAGAATGGCATCCACAACCTTACCTTCTGTTGAAGAGCAGTATCATTCCAGAAAATATTACTTTATTTATATTTCCAGAGGTCCAAACAGCcccgtttaaaaaaaattaaaaaagaccCAACTAATTAAATTAGGTGCAGATTCAATTTGAATGTTGTGAAATGAATGCCCATGATAAAATACCCCTGAGTTATTCAAAACTGAACAAGGGTTTAGGTTACAAGCTAGATATCAGTAAGATGCGAATACAAATACTGTAGTGTTATGACAAGGAATAAAGTCACAAGGTTTGAATTTGTCATTATTAAGGTTTTTTACTTTTGGTTGGCTGTCATTTCAATGTACTCAATAAAAATGGAAAAAGTTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606013 lncRNA downstream 28129 70389608 ~ 70394300 (-) True G1406075
TU1605888 lncRNA downstream 196425 70223162 ~ 70226004 (-) True G1405985
TU1605838 lncRNA downstream 284692 70137387 ~ 70137737 (-) True G1405958
TU1605777 lncRNA downstream 287329 70134770 ~ 70135100 (-) True G1405919
TU1605795 lncRNA downstream 296135 70126051 ~ 70126294 (-) True G1405933
TU1606033 lncRNA upstream 26201 70452235 ~ 70453318 (-) True G1406091
TU1606039 lncRNA upstream 27853 70453887 ~ 70456223 (-) True G1406097
TU1606041 lncRNA upstream 29660 70455694 ~ 70552795 (-) False LOC118939579
TU1606042 lncRNA upstream 29660 70455694 ~ 70458552 (-) True LOC118939579
TU1606043 lncRNA upstream 35655 70461689 ~ 70462523 (-) True G1406099
XM_036947691.1 mRNA downstream 140190 70229839 ~ 70282239 (-) True LOC110492649
XM_036947692.1 mRNA downstream 143409 70229839 ~ 70279020 (-) False LOC110492649
XM_036947694.1 mRNA downstream 143409 70229839 ~ 70279020 (-) False LOC110492649
XM_036947688.1 mRNA downstream 200877 70216539 ~ 70221552 (-) False LOC110492660
XM_036947689.1 mRNA downstream 201140 70216538 ~ 70221289 (-) False LOC110492660
XR_005036615.1 mRNA upstream 31887 70457921 ~ 70458559 (-) False LOC118939579
XM_036947697.1 mRNA upstream 115516 70541550 ~ 70754162 (-) False LOC110492786
XM_036947698.1 mRNA upstream 115516 70541550 ~ 70754162 (-) True LOC110492786
trnat-agu-43 mRNA upstream 577317 71003351 ~ 71003424 (-) True trnat-agu-43
trnah-gug-30 mRNA upstream 578337 71004371 ~ 71004442 (-) True trnah-gug-30
TU1605893 other downstream 201173 70219877 ~ 70221256 (-) True LOC110492660
TU1605761 other downstream 326888 70078657 ~ 70095541 (-) True G1405917
TU1604821 other downstream 904316 69517755 ~ 69518113 (-) True G1405172
TU1604630 other downstream 1142070 69277827 ~ 69280359 (-) True G1405016
TU1604570 other downstream 1215271 69203286 ~ 69207158 (-) True G1404974
TU1606185 other upstream 309613 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 834288 71260322 ~ 71260817 (-) True G1406514
TU1606849 other upstream 1076445 71502479 ~ 71527677 (-) False G1406752
TU1606887 other upstream 1103045 71529079 ~ 71545845 (-) False G1406752
TU1606851 other upstream 1108531 71534565 ~ 71544501 (-) False G1406752

Expression Profile