RNA id: XM_036947695.1


Basic Information

Item Value
RNA id XM_036947695.1
length 2270
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110492651
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70445023 ~ 70463950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGGCTTTTAATCTGAAGGTTTCCTTATTGCCATACTATAGTGACGTCATCGTTTGTGCTGCTGGTAGAACGAACGTCTCTGAAACTACCGGATCCAACATGGAGAGAAAAGTTCTAGCACTTCAGGCAAGGAAGAAGAGGGCGAAAGCAAAGAAGTCGAGCAAGAAACAGCCAGCCCACCCCAGGGGTGCAGCACCCCAGCAGCAGTCCCAGCCAGAGGCCTCTCCCCAGGAACCAGATGAGCCTGAGGAGATCTTAGGCTCTGATGATGAGGAGCAGGAGGATCCCAATGACTACTGCAAGGGTGGCTACCACCATGTGAAGATAGGAGACCTGTTCAATGGGAGGTACCATGTGATCAGGAAGCTGGGCTGGGGACACTTCTCCACTGTGTGGCTGGCTTGGGACATTCAGGTGAAGAGGTTTGTGGCTATGAAAGTGGTGAAGAGTGCAGAGCATTACACAGAGACGGCTGTAGATGAGATCAAACTGCTCAGATCTGTGAGAAACACGGACCCTGACGACCCCAAGAGGGAGATGGTGGTTCAGCTACTGGATGACTTCAAGATCTCCGGCATCAACGGGACTCATGTGTGCATGGTGTTTGAGGTGCTGGGGCACCACCTACTGAAGTGGATCATCAAGTCCAACTACCAGGGCCTTCCACTGCCCTGCGTCAAGACCATCATACGACAGGTTCTCCAGGGGTTGGACTACCTTCACACCAAGTGTGAGATCATCCACACTGACATCAAGCCAGAGAACATCCTGTTGACGGTGAATGAGCCGTACGTGAGGAGGCTGGCCGCGGAGGCCACAGAGTGGCAGAAAGCAGGGGCTCCCCCTCCCTCAGGGTCCGCAGTCAGCACAGCTCCAGCTCCAAAAGCAacgACCAAAATGTCCAAGAACAAGAAGAAGAAATTAAAGAAGAAGCAGAAGCGTCAGGCGGAGCTGTTGGAGAAGTGCATTCTGGAtctggaggagatggagaaggctccggagagggaggaggaggatgacgaAGAGGATCCGGAGTCTCCCGTATCTCCCAAGCAGCAGCGGCCATATTGTGCTCCTCTCAGACAAGTCTCCTTACAGGAAGTAGCCAGCCAAGACACAGCAGGATGCATTGCGGGTGCGGAGGTGACGTGGTTAGGACCAGAAGGGATAATAACAGACGCAGAAGTGAACTGTAACGGCCTTCATCCTGAGGCAGGGGACAATGAAACGGAGGAGAGGAAGGCACAGTGGAGAGAGCAAGACCAACACAACGGCAACGTAGACCAAACAGGGGATTGTCCTCTTCTTCAGGAGTCTCCACCACTTCGACCCGTGTATAACGGCCTGGTGTCCCCGGATACCCCAGAGAGTGAGGAGGGGAGTGGAGCACCGACCAGGAAGGAGGCTGAAATAAAGACTAAAGCATCCAAGACTGAGACGAAAAGCTTTGGTGGCCGGGAGGAGCTATCGTCGGAGGAGCAGAAGAATCAGGAAAGGAGTCAAGTGGAAGTCACAGAGGAGGCGCAGGGCAGGAGTCGTggagaggaggtgctggagaacGTCCAGtatggaggagaacaggagagtcTGAAGGATGGTGAGAAGACGGCCAAATTAGCAGCGGGGAACCTCCTGGTGAACCCTCTGGAGCCACTCAACGCAGACAGACTGAAGGTCAAGATAGCAGACCTGGGCAACGCCTGCTGGCTGCACAAGCACTTTACGGAAGACATCCAGACGAGACAGTACCGTTCTCTAGAGGTGCTCATAGGGTCTGGCTACAACACACCAGCTGACATATGGAGTACAGCCTGCATGGCGTTTGAGCTGGCCACTGGGGACTACTTGTTTGAGCCTCATTCCGGGGAAGATTACTCCAGGGACGAAGACCATATCGCATTGATCATCGAGCTGCTGGGGCAAGTCCCACACAAACTCGTAACAGCCGGGAGATATTCAAAGGATTTTTTCACCAAGAAAGGGGACCTGAAGCACATCACCAAGCTGAAGCCATGGGGGTTACTAGAGGTGCTGCAGGATAAGTACGAGTGGTCCAAAGAGGAGGCTGATTGTTTCGCTGACTTCCTCCTCCCCATGCTGGAGCTGGTACCAGAGAAGAGAGCCACGGCTGCAGACTGCCTGCGCCACCCCTGGATCGCCCCCCAGTGACGGCCCCCCAGTACTGCAATGCAAAACACCTAGGGCCTGTTCAGTCGACAAACGTTTTTGAATGTTGCAGCTAATTCGAATGACTGGAGCTGACTTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1605529 lncRNA upstream 33598 70403351 ~ 70411425 (+) False snrpg
TU1605530 lncRNA upstream 33615 70403351 ~ 70411408 (+) True snrpg
TU1605539 lncRNA upstream 34490 70410094 ~ 70410533 (+) True G1405741
TU1605527 lncRNA upstream 57000 70387770 ~ 70388023 (+) True G1405731
TU1605511 lncRNA upstream 72459 70370967 ~ 70372564 (+) True G1405724
TU1605595 lncRNA downstream 77638 70541588 ~ 70546359 (+) False G1405789
TU1605596 lncRNA downstream 77638 70541588 ~ 70546359 (+) False G1405789
TU1605597 lncRNA downstream 77638 70541588 ~ 70546359 (+) False G1405789
TU1605598 lncRNA downstream 77638 70541588 ~ 70546404 (+) True G1405789
TU1605615 lncRNA downstream 103342 70567292 ~ 70571205 (+) True G1405805
XM_021567085.2 mRNA upstream 1036 70432898 ~ 70443987 (+) True si:ch211-207e14.4
XM_021567101.2 mRNA upstream 17471 70426100 ~ 70427552 (+) False LOC110492662
XM_021567102.2 mRNA upstream 17471 70426105 ~ 70427552 (+) False LOC110492662
XR_005036613.1 mRNA upstream 17471 70426121 ~ 70427552 (+) False LOC110492662
XR_005036614.1 mRNA upstream 17471 70426125 ~ 70427552 (+) True LOC110492662
XR_005036398.1 mRNA downstream 4258 70468208 ~ 70468967 (+) True LOC118939481
XM_036945797.1 mRNA downstream 307557 70771507 ~ 70772049 (+) True LOC118939465
trnah-gug-7 mRNA downstream 349250 70813200 ~ 70813271 (+) True trnah-gug-7
trnah-gug-8 mRNA downstream 351599 70815549 ~ 70815620 (+) True trnah-gug-8
trnah-gug-9 mRNA downstream 353958 70817908 ~ 70817979 (+) True trnah-gug-9
TU1605451 other upstream 187593 70256822 ~ 70257430 (+) True G1405676
TU1605337 other upstream 312722 70129921 ~ 70132301 (+) True G1405605
TU1604973 other upstream 772349 69671464 ~ 69672674 (+) True G1405310
TU1604870 other upstream 858117 69585989 ~ 69586906 (+) True G1405218
TU1604868 other upstream 861397 69582533 ~ 69583626 (+) True G1405216
TU1606344 other downstream 505665 70969615 ~ 70972604 (+) True G1406381
TU1606401 other downstream 738492 71202442 ~ 71206092 (+) True G1406424
TU1606505 other downstream 746322 71210272 ~ 71210764 (+) True G1406505
TU1606507 other downstream 750427 71214377 ~ 71216430 (+) True G1406507
TU1606508 other downstream 781623 71245573 ~ 71246023 (+) True G1406508

Expression Profile