RNA id: trnat-agu-62


Basic Information

Item Value
RNA id trnat-agu-62
length 74
RNA type mRNA
GC content 0.46
exon number 1
gene id trnat-agu-62
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71032172 ~ 71032245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgctgtggcttagttggttaaagtgcctgtctagtaaacaggagatcctgagttcaaatctcagcagtacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606353 lncRNA downstream 42642 70962973 ~ 70989530 (-) True G1406388
TU1606327 lncRNA downstream 125956 70905290 ~ 70906216 (-) True G1406367
TU1606325 lncRNA downstream 128099 70903817 ~ 70904073 (-) True G1406365
TU1606324 lncRNA downstream 130267 70901634 ~ 70901905 (-) True G1406364
TU1606321 lncRNA downstream 131168 70900631 ~ 70901004 (-) True G1406361
TU1606377 lncRNA upstream 40862 71073107 ~ 71076732 (-) True G1406407
TU1606391 lncRNA upstream 62734 71094979 ~ 71095352 (-) True G1406416
TU1606394 lncRNA upstream 65754 71097999 ~ 71098250 (-) True G1406419
TU1606396 lncRNA upstream 67000 71099245 ~ 71099572 (-) True G1406421
TU1606478 lncRNA upstream 125085 71157330 ~ 71157705 (-) True G1406482
trnat-agu-61 mRNA downstream 1288 71030811 ~ 71030884 (-) True trnat-agu-61
trnat-agu-60 mRNA downstream 2649 71029450 ~ 71029523 (-) True trnat-agu-60
trnah-gug-44 mRNA downstream 3007 71029094 ~ 71029165 (-) True trnah-gug-44
trnat-agu-59 mRNA downstream 4025 71028074 ~ 71028147 (-) True trnat-agu-59
trnah-gug-43 mRNA downstream 4383 71027718 ~ 71027789 (-) True trnah-gug-43
trnah-gug-45 mRNA upstream 947 71033192 ~ 71033263 (-) True trnah-gug-45
trnah-gug-46 mRNA upstream 2323 71034568 ~ 71034639 (-) True trnah-gug-46
trnat-agu-63 mRNA upstream 2679 71034924 ~ 71034997 (-) True trnat-agu-63
trnah-gug-47 mRNA upstream 3699 71035944 ~ 71036015 (-) True trnah-gug-47
trnat-agu-64 mRNA upstream 4055 71036300 ~ 71036373 (-) True trnat-agu-64
TU1606185 other downstream 289993 70735647 ~ 70742179 (-) True G1406228
TU1605893 other downstream 810916 70219877 ~ 70221256 (-) True LOC110492660
TU1605761 other downstream 936631 70078657 ~ 70095541 (-) True G1405917
TU1604821 other downstream 1514059 69517755 ~ 69518113 (-) True G1405172
TU1604630 other downstream 1751813 69277827 ~ 69280359 (-) True G1405016
TU1606514 other upstream 228077 71260322 ~ 71260817 (-) True G1406514
TU1606849 other upstream 470234 71502479 ~ 71527677 (-) False G1406752
TU1606887 other upstream 496834 71529079 ~ 71545845 (-) False G1406752
TU1606851 other upstream 502320 71534565 ~ 71544501 (-) False G1406752
TU1606876 other upstream 504067 71536312 ~ 71545845 (-) False G1406752