RNA id: XM_036945800.1


Basic Information

Item Value
RNA id XM_036945800.1
length 1929
RNA type mRNA
GC content 0.54
exon number 4
gene id ngrn
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72641881 ~ 72646008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTCGACCAAGTAGTGACTGAAATGTATCGGGGGTTTTCAACACCACATGCCAGTAGGTGGCAGTATGTGGAAATATAGGTTGTATGCCAGACTGTTTGCGGAAAGGCTGCATCGTTTCCACGAGACAAGCAGGTCTAGACTGAAATGTAGCTAAAGAAAGCAGGAGAATCTTATTTGGTAGTGTCTGGTGACCAGTGGTGAGCCTTCAGAATAGCCATGATGTCTTTCAGGATTGTCTCCTTGATAGCCTCAAGGCTTGGCAAACTGTCAGTGATGCCCACAAGGAGCTGTAGTCGACACCTCTGCAGCGATGCCAGCAAGGCCTGGATGGATCAGAGGCAGACACACAGGACCTCGGCCCACAGacacagagggaaggaggagaggtctGAAGATCCAGATCCAGATGTGGACGATGTAGACGACAAGGTCCAGGCTGTGTTCAGtgaagagaggaggagacagaggacgGTGAAGTACCATATAGTTAAGAGACAGCTGACCGAGTCTGGAGCTCCAGAGAGGAGGCTGAGCTGGGACGCCATGGAACAGATCAGGTATCTGAAGCAGGAGCTACCAGAGGAATGGACCATTGACCGTCTGGCAGAGGGATTCTCGGTCCATCGTGACGTCATCCTACGAGTCCTGAGGAGCAAGTTCGCCCCCACCCCAGAGAGGAAAGCTAAACAGGACACCAGCGTGTGGGCCAGGCTGAGACAGCAGGCCTTACCTGGGGGTGGAGCAGGGGGACAGGATAGGCAGGTGGCCCTACCTGGAGGGagacagggcaggcagaaagCCCTACCTGGGGGTGGAGCAGGGGGACAGGGCGGGCAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGGGCGGGCAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGAGCAGGCAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGGAGAGGCAGGTGGCCCTACTTGGGGGTGGAGCAGGGGAACAGGGCAGGCAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGAAAGCCCTACCTGGGGGTGGAGCAGGGGGACAGGATAGGCAGGTGGCCCTACCTGGTGGTGGAGAGGCAGGGAGGCCGGGCAGAACACAGCTGCCTGCCTCTGGACATAGAAGTAGGAAACCAGCCATGCTGCCCACAGGAAGTGACACTGGTGCCCTGGTCACCCTGGCTAGCCACAGTAGCCAGAGGCTGATAGCCAGGGACTTGGAGGATGACCCTGGCCCAAGAGCCATGATGACTACTGCAAATTATCCTGCTGCTCCTCTCACCTCACTACCCACCCAGCTCTCATCCTCACCAACCCTGCACAGCAGACACACCTCAGGACAAGATGACTCGAGAGGggagtgggaggaagaggaaaATGTGTCGGAGAAAGACgaccaggaggagagatgggatggAAGGGTGTTTTCAGAGGAAGAACTGGAGGAACTAATGCTGACGTCAAAGCCTTCGCCAGTGGTACCGAATGGGAGAGAGTTCTTTGACAGTGAAGGAAACTTCCTGTACAGAATCTGAGCTggcaaaatggcaccctattccctacatagtgcactacttttgaccagggctaatggcaccctattccctatattagtgcactactttagaccaggacctgaTGGGTGCCATTTTAGAAGTAGCCTGAGATGTTGTTAATGTGTTGGTTTCCTAAATACAGTCAAATGCAATAGACTTCTGTTGGAAGATGCCGGAGACTCTGATTATGCCGCAAACCAATAAAGCACCATTTCAAATGTATGGGTTAGTCACAAGTTTTGATTCTATACTTTGTTTTCTTGAATGTTGCACATATTGACATTGgaatgaaatgtaattttaagTTCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1607716 lncRNA upstream 22247 72618638 ~ 72619634 (+) True G1407430
TU1607719 lncRNA upstream 99090 72540436 ~ 72542791 (+) True G1407433
TU1607647 lncRNA upstream 132720 72441633 ~ 72509161 (+) True G1407371
TU1607642 lncRNA upstream 204870 72435238 ~ 72437011 (+) True G1407367
TU1607641 lncRNA upstream 209185 72429808 ~ 72432696 (+) True G1407366
TU1607764 lncRNA downstream 11002 72657010 ~ 72657362 (+) True G1407472
TU1607778 lncRNA downstream 25263 72671271 ~ 72683597 (+) True G1407485
TU1607782 lncRNA downstream 31980 72677988 ~ 72678350 (+) True G1407488
TU1607788 lncRNA downstream 42652 72688660 ~ 72693547 (+) True G1407493
TU1607795 lncRNA downstream 65822 72711830 ~ 72712090 (+) True G1407500
XM_036947725.1 mRNA upstream 222521 72371494 ~ 72419360 (+) True LOC110491175
LOC110492916 mRNA upstream 308549 72331814 ~ 72333332 (+) False LOC110492916
LOC110492683 mRNA upstream 377126 72263336 ~ 72264755 (+) True LOC110492683
XR_005036620.1 mRNA upstream 378674 72246688 ~ 72263207 (+) False LOC118939586
XR_005036619.1 mRNA upstream 392375 72246162 ~ 72249506 (+) True LOC110492682
XM_021567151.2 mRNA downstream 56430 72702438 ~ 72709614 (+) True sypl2b
XR_005036621.1 mRNA downstream 60325 72706333 ~ 72707004 (+) True LOC118939587
XM_036947742.1 mRNA downstream 108075 72754083 ~ 72768074 (+) False amigo1
XM_036947743.1 mRNA downstream 108075 72754083 ~ 72768074 (+) False amigo1
XM_036947741.1 mRNA downstream 120534 72766542 ~ 72769227 (+) True LOC118939588
TU1607455 other upstream 362326 72216313 ~ 72279555 (+) True G1407199
TU1607441 other upstream 538040 72103386 ~ 72103841 (+) True G1407190
TU1606602 other upstream 1225454 71415899 ~ 71416427 (+) False G1406555
TU1606601 other upstream 1226084 71413557 ~ 71415797 (+) False G1406555
TU1606510 other upstream 1384904 71255979 ~ 71256977 (+) True G1406510
TU1607815 other downstream 119894 72765902 ~ 72769218 (+) True G1407509
TU1607846 other downstream 162722 72808730 ~ 72816723 (+) True LOC110492598
TU1607712 other downstream 179513 72825521 ~ 72883526 (+) True LOC110491159
TU1607891 other downstream 265975 72911983 ~ 72929719 (+) True G1407566
TU1608614 other downstream 779739 73425747 ~ 73426266 (+) True G1408176

Expression Profile