RNA id: XM_036947748.1


Basic Information

Item Value
RNA id XM_036947748.1
length 958
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110492600
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73040535 ~ 73047672 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGTGACATTCAAATCCCGTTTATAATCTCGCGACGTTTGACGGTCTCTTTGCAGTAGAAGGGCACGAAGAGAAGGTGGTCAGGAAATCTAAGACTTGGCACTTTTTCCGTTTAACCAATGCTGTCTAGGATCGTTTTCGTTTCAGCTAATGCTGTAAAAAGCAGTGGTCCCCTCGGCGCTGGGCTGGTCCAGCTGTCCCACCTCCACACGTCCCCCAACAGCCAAGCTCCAGTCCCTGCTCTGCCAGAGAAGGGAGGCAAGACACGCCATGGCATCATCCCTGAGGAGATCTTCCAGCTCCTGTACCCCAAGACTGGAGTCACAGGCCCCTACATGCTGGGTGCTGGGCTGCTCACGTACATTCTCTCCAAGGAGATCTACATCATCAACCACGAGACCTTCGCTGCTGCCTGCATGGGTACGGTCATCATCTACGGTGTCAGGAAGTTCGGCCCCGACGTCGCGGCTTTCGCTGACAAACTGAACGAGGAGAAAGTGCAGAAGGCTCAGGAAGTGAAGGACCTGGCCATGACCAGCTTGGCTCAGGCCGTCCTGGATGAGAAGAAGGAGCAGTGGAGAGCAGAGGGACGACAGATGCTCTTCGACGCTAAGAGGAACAACGTGGCCATGCTACTGGAGACCAACCGTAGGGAGAGGGTCCACATGGTGACCAACGAGGTGAAGAAGAGGCTGGACTACCAGATCGCCCTGCAGACCCTTCATCGCCGCATGGAGCAGGAACACATGGTGAACTGGGTGGAGAAGAACGTAGTCACCAGCATCACCCCCCAGCAGGAGAAGACGAGTATTGCCAAGTGCATCACAGACCTGAAGGTGTTGGCTAAAGTCCAGCAGGCTAAGGCCACTGTGTAATTCACCACTGTAACAGTCTAGACCTTCTCTCCTGAACCCCAACTGTTTTCATTTCAAATAAACTATTTCCTCTTTAACCATA

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02127 ATPeF0B, ATP5F1, ATP4; F-type H+-transporting ATPase subunit b

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609066 lncRNA downstream 12572 73026985 ~ 73027963 (-) True G1408524
TU1608386 lncRNA downstream 74065 72966259 ~ 72966470 (-) True G1407991
TU1608384 lncRNA downstream 78620 72961549 ~ 72961915 (-) True G1407989
TU1608373 lncRNA downstream 90027 72947609 ~ 72950508 (-) True G1407979
TU1608360 lncRNA downstream 117856 72920388 ~ 72922679 (-) True G1407968
TU1609106 lncRNA upstream 512 73048184 ~ 73050071 (-) True G1408560
TU1609108 lncRNA upstream 20690 73068362 ~ 73070422 (-) False G1408561
TU1609109 lncRNA upstream 21707 73069379 ~ 73070422 (-) False G1408561
TU1609110 lncRNA upstream 21707 73069379 ~ 73070422 (-) True G1408561
TU1609055 lncRNA upstream 36105 73083777 ~ 73090354 (-) True G1408513
XM_036947746.1 mRNA downstream 110769 72904370 ~ 72929766 (-) False LOC110491158
XM_036947745.1 mRNA downstream 110770 72904370 ~ 72929765 (-) False LOC110491158
XM_036947731.1 mRNA downstream 356908 72646017 ~ 72683627 (-) True LOC110492692
XM_036947733.1 mRNA downstream 399162 72620726 ~ 72641373 (-) False LOC110492693
XM_036947737.1 mRNA downstream 399162 72620726 ~ 72641373 (-) True LOC110492693
XM_021567036.2 mRNA upstream 44749 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XM_021567037.2 mRNA upstream 44749 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XR_005036623.1 mRNA upstream 67751 73115423 ~ 73144288 (-) False LOC110491162
XM_036947753.1 mRNA upstream 71213 73118885 ~ 73142587 (-) False LOC110491162
XM_036947752.1 mRNA upstream 71213 73118885 ~ 73144288 (-) False LOC110491162
TU1608117 other downstream 602688 72435429 ~ 72437847 (-) True G1407755
TU1607973 other downstream 707820 72331806 ~ 72332715 (-) True G1407628
TU1606876 other downstream 1494690 71536312 ~ 71545845 (-) False G1406752
TU1606851 other downstream 1496034 71534565 ~ 71544501 (-) False G1406752
TU1609186 other upstream 183140 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 722184 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 722432 73770104 ~ 73777357 (-) False ppdpfb
TU1609392 other upstream 722478 73770150 ~ 73777357 (-) False ppdpfb
TU1609395 other upstream 722478 73770150 ~ 73777357 (-) False ppdpfb

Expression Profile