RNA id: XR_005036623.1


Basic Information

Item Value
RNA id XR_005036623.1
length 4984
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110491162
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73115423 ~ 73144288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACGGACAACTCCCCCTACCAGCCCCCCATGACGCAAATTAATTAATCTCTTCAGATGCTGTTGCAGCAGAGTTGGTCCTATTCAGAGAAAGCCGGGTGGAGGACAACAGTTGATGAGCAAGAAAAGCCACATTGAAGTCTCTGATttataaatattatatttacGGGAAGAAAAATAAGATTATGGTTATAGTGTTTTAAAAAAACCCAAAATGGCACAGAATAATAATACGTTATTACATCTCTTCGCGGGGGGATGTAGCGGCACGGTGGGAGCCATTGTGACTTGTCCTCTGGAGGTGCTGAAGACCAGGTTGCAGTCTTCAGGCATCACGCTCCGGCCCATGTTCCAGGTCCAACTGGGCACTCTCAATGGTACTGGGGTCATCAGACCAGGCTCAGGCACCATTACACCACCTGGCCTGCTGCAGGTCTTACGGTCAATTCTAGAAAAAGAGGGTCCAAGGTCTCTTTTCCGGGGACTGGGTCCAAATCTTGTCGGTGTCGCCCCTTCAAGAGCTATTTATTTTGCTGCCTACAAGAAGGCGAAAGAGACGTTCAACGGGGTCTTCGTCCCCAACAGCGGAGTGGTGCACATGTCCTCAGCTGGCTTTGCAGCCTTTGTTACAAACTCCCTCATGAACCCTGTCTGGATGGTTAAGACCAGGATGCAGCTGGAGAGAAAGGCGCGAGGGGAGAAGAAGACGAACGCGCTGCAGTGTGCCCGTAACGTTTACAAGACAGAGGGCATGAGAGGTTTCTACCGGGGCCTGACGGCGTCCTACGCTGGCATCTCCGAGACCATGATCTGTTTCCTCATCTACGAGACGCTGAAGAAACGCCTGAACGAAGCGCGCTTCACGTCGCCGAACAGCGAGACGGAAAAAGGGGCGTCGGACTTCCTAGGCCTGATGATGGCGGCTGCCTTCGCTAAGGGCTGTGCTTCCTGCATAGCCTACCCGCACGAGGTGATTCGGACAAGGCTGCGAGAAGAGGGCAGCAAATATCTGTACTTCTTCCAGACAGCCCGGTTGGTGGCAGTGGAGGAGGGCTACGCTGCGTTTTACAGAGGACTCATTCCACAGCTCATCAGACAGATCCCCAACACAGCCATCGTCCTCTCCACCTACGAACTCATTGTCCACCTGATGGGAGACTCCTCGCAATGATCAATGACGACGTGTTCTGGTCGGGCCCATCAGATGGAAGGGCAACATTATGTAGCTGTGTACCCCAAGGCACGTTGGCTAAGAAAGAGACTATCGTGCAATTGCAGAAGAAagaaaacttgtttttttttgtgaactgTTGGTTTCTCTTGAAGGAATTTGAAAGCAGGTTTTACTGTTATCCAAAGGACCTGAAACTGATTTTTaaggcttgcatcccaaatggaaaaCTATCCCCTATCCCTatttagggcactacttttgaccagagccttatcggctctagtcaaaagtagtgcactctgtaaggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaataagggaGCATTTGGGACTCtggaaaaataatgttttattttaatGGAAGCATGTTATGTTTATTAAGGTGTTCAGAATAATTTTACGCTCTCAAGAATTGTGGTACTTATGACAGGACAACTCTAGCCCGAGTCCCAGATCGGTTTGTGCTGTTATTACCAACTCCACTGCTGTCATTTTGAGTTGTAAGTTGGCAAGACGACACAAACAGATCCGGGAATCGGGCTAGGACTACTCCATGTCCCGAGAAGAACTTTAGTTTCCGTTTTGAATCATACGAGGTAAAGCGGTCACCTGAATAGGTGGGCCACTAGTTAAGTTCAACTAAATTATTTTCTTGTATTTGTATTGTTAAATGCTGTTTCTCTGACGGTTATCCATGTTGAATGTCCAACGTTCCACCACTTTCTTTGGCTACAGGCTATTTCATTACAGGCTATTTCATTACAGGTTATTTCATTACAGGCTATTTCATTACAGGCTATTTCATTACAGGCTATTTCATTACAGGTTATTTCATTACAGGTTGTTTCATTACAGGTTATTTCATTACAGGTTATTTCATTACAGGCTATTTCATTACAGGCTATTTCATTACAGGTTATTTCATTACAGGTTATTTCATTACAGGCTGTTTCATTACAGGCTATTTCATTACAGGTTATTTCATTACAGGTTATTTCATTACAGGTTATTTCATTACAGGTTATTTCATTACAGGCTATTTCATTACAGGCTATTTCATTACAGGTTATTTCATTACAGGTTATTTTATTTCACACTAATGATGAGAAAGAAGGTGGAGGCATAGCTAGAGTTGTTATTTGCCAggcaaaagcacacacacacactcatgataGTTTATTTATTCACTACCACACGGTGAAGTTTTGATTAGAATTATCGCTGAGTAATGCATCATATTTTACATGACGAATACAGATGAATCTGTAATATTGTGTTTGTTAAAGAACATGGTCATCTTTTACAATATAACGACAACGTGAATGCTTATTTGACCAGTGGCTCAATAAAATTGCATCAATAAGTGGTTTGGTTCATTTGTTTTTGAATGGTGTCATACTACAGTAACCTGGTTGGAAAATACAGACTTGTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTTGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTTGAATGGTGTCATACTACAGTAACCTGGTTGGAAAATATAGACTTGTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTATTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCCCTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTTTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCCCTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCCCTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCCCTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCCCTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCCCTTGGTGGTCTACAGTAAAAGATGGACTGGATTTTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAGATGGACTGGATTATTTTGGTGTTATGGATTTCCCTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCCCTTGGTGGTCTACAGTAAAAGATGGACTGGATTGTTTTGGTGTTATGGATTTCACTTGGTGGTCTACAGTAAAAAGATGCTGAATGTCAACTGGATTTTCTCACTTCACAACTCCATACCAAACTACACTTTACATAGTGGTTCAATCAAAAGTGAAAACCCTATGCAAAGACTGagaaggatatatatatatattacgcCCAACTCTTATCAAATGTAGTCTGATTTACTACAACATCCTCATAACAAGTTGCATCAACTTTGTTTGGAATGGACCGTGGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCGTGAACACTAGAATACCCTGGACACTAGAATACCCTGGACACTAGAATACCGTGGACACTAGAATACCCTGGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCCTGGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCCTGGACACTAGAATACCGTGGACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCCTGGACACTAGAATACCCTGGACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCCTGGACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCCTGGACACTAGAATACCGTGGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCCTGGACACTAGAATACCCTGGACACTAGAATACCGTGGACACTAGAATACCGTGGACACTGGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCGTCGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609059 lncRNA downstream 306 73113416 ~ 73115117 (-) True G1408517
TU1609137 lncRNA downstream 13712 73101419 ~ 73101711 (-) True G1408573
TU1609132 lncRNA downstream 17241 73092471 ~ 73098182 (-) True si:ch211-150o23.3
TU1609135 lncRNA downstream 20679 73094047 ~ 73094744 (-) True G1408571
TU1609055 lncRNA downstream 25069 73083777 ~ 73090354 (-) True G1408513
TU1609125 lncRNA upstream 15520 73159808 ~ 73167314 (-) True LOC110492609
TU1609163 lncRNA upstream 21292 73165580 ~ 73166585 (-) True G1408596
TU1609173 lncRNA upstream 44057 73188345 ~ 73188550 (-) True G1408606
TU1609176 lncRNA upstream 52115 73196403 ~ 73199380 (-) True G1408609
TU1609182 lncRNA upstream 66171 73210459 ~ 73210813 (-) True G1408611
XM_021567036.2 mRNA downstream 15157 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XM_021567037.2 mRNA downstream 15157 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XM_036947748.1 mRNA downstream 67751 73040535 ~ 73047672 (-) True LOC110492600
XM_036947746.1 mRNA downstream 185657 72904370 ~ 72929766 (-) False LOC110491158
XM_036947745.1 mRNA downstream 185658 72904370 ~ 72929765 (-) False LOC110491158
XM_021567040.2 mRNA upstream 3008 73147296 ~ 73167393 (-) False LOC110492609
XR_005036624.1 mRNA upstream 90228 73234516 ~ 73236615 (-) False LOC118939590
XM_036947780.1 mRNA upstream 565841 73710129 ~ 73742096 (-) False LOC110492449
XM_036947781.1 mRNA upstream 565841 73710129 ~ 73742096 (-) False LOC110492449
XM_021566779.2 mRNA upstream 625894 73770182 ~ 73777432 (-) False ppdpfb
TU1608117 other downstream 677576 72435429 ~ 72437847 (-) True G1407755
TU1607973 other downstream 782708 72331806 ~ 72332715 (-) True G1407628
TU1606876 other downstream 1569578 71536312 ~ 71545845 (-) False G1406752
TU1606851 other downstream 1570922 71534565 ~ 71544501 (-) False G1406752
TU1609186 other upstream 86524 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 625568 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 625816 73770104 ~ 73777357 (-) False ppdpfb
TU1609392 other upstream 625862 73770150 ~ 73777357 (-) False ppdpfb
TU1609395 other upstream 625862 73770150 ~ 73777357 (-) False ppdpfb

Expression Profile