RNA id: XM_036947753.1


Basic Information

Item Value
RNA id XM_036947753.1
length 1932
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110491162
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73115423 ~ 73144288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGGGGAAAGAGGATCTTAAGATGTAGCGGCACGGTGGGAGCCATTGTGACTTGTCCTCTGGAGGTGCTGAAGACCAGGTTGCAGTCTTCAGGCATCACGCTCCGGCCCATGTTCCAGGTCCAACTGGGCACTCTCAATGGTACTGGGGTCATCAGACCAGGCTCAGGCACCATTACACCACCTGGCCTGCTGCAGGTCTTACGGTCAATTCTAGAAAAAGAGGGTCCAAGGTCTCTTTTCCGGGGACTGGGTCCAAATCTTGTCGGTGTCGCCCCTTCAAGAGCTATTTATTTTGCTGCCTACAAGAAGGCGAAAGAGACGTTCAACGGGGTCTTCGTCCCCAACAGCGGAGTGGTGCACATGTCCTCAGCTGGCTTTGCAGCCTTTGTTACAAACTCCCTCATGAACCCTGTCTGGATGGTTAAGACCAGGATGCAGCTGGAGAGAAAGGCGCGAGGGGAGAAGAAGACGAACGCGCTGCAGTGTGCCCGTAACGTTTACAAGACAGAGGGCATGAGAGGTTTCTACCGGGGCCTGACGGCGTCCTACGCTGGCATCTCCGAGACCATGATCTGTTTCCTCATCTACGAGACGCTGAAGAAACGCCTGAACGAAGCGCGCTTCACGTCGCCGAACAGCGAGACGGAAAAAGGGGCGTCGGACTTCCTAGGCCTGATGATGGCGGCTGCCTTCGCTAAGGGCTGTGCTTCCTGCATAGCCTACCCGCACGAGGTGATTCGGACAAGGCTGCGAGAAGAGGGCAGCAAATATCTGTACTTCTTCCAGACAGCCCGGTTGGTGGCAGTGGAGGAGGGCTACGCTGCGTTTTACAGAGGACTCATTCCACAGCTCATCAGACAGATCCCCAACACAGCCATCGTCCTCTCCACCTACGAACTCATTGTCCACCTGATGGGAGACTCCTCGCAATGATCAATGACGACGTGTTCTGGTCGGGCCCATCAGATGGAAGGGCAACATTATGTAGCTGTGTACCCCAAGGCACGTTGGCTAAGAAAGAGACTATCGTGCAATTGCAGAAGAAagaaaacttgtttttttttgtgaactgTTGGTTTCTCTTGAAGGAATTTGAAAGCAGGTTTTACTGTTATCCAAAGGACCTGAAACTGATTTTTaaggcttgcatcccaaatggaaaaCTATCCCCTATCCCTatttagggcactacttttgaccagagccttatcggctctagtcaaaagtagtgcactctgtaaggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaataagggaGCATTTGGGACTCtggaaaaataatgttttattttaatGGAAGCATGTTATGTTTATTAAGGTGTTCAGAATAATTTTACGCTCTCAAGAATTGTGGTACTTATGACAGGACAACTCTAGCCCGAGTCCCAGATCGGTTTGTGCTGTTATTACCAACTCCACTGCTGTCATTTTGAGTTGTAAGTTGGCAAGACGACACAAACAGATCCGGGAATCGGGCTAGGACTACTCCATGTCCCGAGAAGAACTTTAGTTTCCGTTTTGAATCATACGAGGTAAAGCGGTCACCTGAATAGGTGGGCCACTAGTTAAGTTCAACTAAATTATTTTCTTGTATTTGTATTGTTAAATGCTGTTTCTCTGACGGTTATCCATGTTGAATGTCCAACGTTCCACCACTTTCTTTGGCTACAGGCTATTTCATTACAGGTTATTTCATTACAGGTTGTTTCATTACAGGTTATTTCATTACAGGTTATTTCATTACAGGCTATTTCATTACAGGCTATTTCATTACAGGTTATTTCATTACAGGTTATTTCATTACAGGCTGTTTCATTACAGGTTATTTCATTACAGGCTATTTCATTACAGGCTATTTCATTACAGGTTATTTCATTACAGGTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609141 lncRNA downstream 2725 73115736 ~ 73116160 (-) True LOC110491162
TU1609059 lncRNA downstream 3768 73113416 ~ 73115117 (-) True G1408517
TU1609137 lncRNA downstream 17174 73101419 ~ 73101711 (-) True G1408573
TU1609132 lncRNA downstream 20703 73092471 ~ 73098182 (-) True si:ch211-150o23.3
TU1609135 lncRNA downstream 24141 73094047 ~ 73094744 (-) True G1408571
TU1609125 lncRNA upstream 17221 73159808 ~ 73167314 (-) True LOC110492609
TU1609163 lncRNA upstream 22993 73165580 ~ 73166585 (-) True G1408596
TU1609173 lncRNA upstream 45758 73188345 ~ 73188550 (-) True G1408606
TU1609176 lncRNA upstream 53816 73196403 ~ 73199380 (-) True G1408609
TU1609182 lncRNA upstream 67872 73210459 ~ 73210813 (-) True G1408611
XM_021567036.2 mRNA downstream 18619 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XM_021567037.2 mRNA downstream 18619 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XM_036947748.1 mRNA downstream 71213 73040535 ~ 73047672 (-) True LOC110492600
XM_036947746.1 mRNA downstream 189119 72904370 ~ 72929766 (-) False LOC110491158
XM_036947745.1 mRNA downstream 189120 72904370 ~ 72929765 (-) False LOC110491158
XM_021567040.2 mRNA upstream 4709 73147296 ~ 73167393 (-) False LOC110492609
XR_005036624.1 mRNA upstream 91929 73234516 ~ 73236615 (-) False LOC118939590
XM_036947780.1 mRNA upstream 567542 73710129 ~ 73742096 (-) False LOC110492449
XM_036947781.1 mRNA upstream 567542 73710129 ~ 73742096 (-) False LOC110492449
XM_021566779.2 mRNA upstream 627595 73770182 ~ 73777432 (-) False ppdpfb
TU1608117 other downstream 681038 72435429 ~ 72437847 (-) True G1407755
TU1607973 other downstream 786170 72331806 ~ 72332715 (-) True G1407628
TU1606876 other downstream 1573040 71536312 ~ 71545845 (-) False G1406752
TU1606851 other downstream 1574384 71534565 ~ 71544501 (-) False G1406752
TU1609186 other upstream 88225 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 627269 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 627517 73770104 ~ 73777357 (-) False ppdpfb
TU1609392 other upstream 627563 73770150 ~ 73777357 (-) False ppdpfb
TU1609395 other upstream 627563 73770150 ~ 73777357 (-) False ppdpfb

Expression Profile