RNA id: TU1609141


Basic Information

Item Value
RNA id TU1609141
length 425
lncRNA type sense_over
GC content 0.44
exon number 1
gene id LOC110491162
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73115423 ~ 73144288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACACTAGAATACCCTGGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCCTGGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCCTGGACACTAGAATACCGTGGACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCCTGGACACTAGAATACCCTGGACACTAGAATACCGTGAACACTAGAATACCGTGGACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCGTGAACACTAGAATACCCTGGACACTAGAATACCGTGAACACTAGAATACCG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609059 lncRNA downstream 619 73113416 ~ 73115117 (-) True G1408517
TU1609137 lncRNA downstream 14025 73101419 ~ 73101711 (-) True G1408573
TU1609132 lncRNA downstream 17554 73092471 ~ 73098182 (-) True si:ch211-150o23.3
TU1609135 lncRNA downstream 20992 73094047 ~ 73094744 (-) True G1408571
TU1609055 lncRNA downstream 25382 73083777 ~ 73090354 (-) True G1408513
TU1609125 lncRNA upstream 43648 73159808 ~ 73167314 (-) True LOC110492609
TU1609163 lncRNA upstream 49420 73165580 ~ 73166585 (-) True G1408596
TU1609173 lncRNA upstream 72185 73188345 ~ 73188550 (-) True G1408606
TU1609176 lncRNA upstream 80243 73196403 ~ 73199380 (-) True G1408609
TU1609182 lncRNA upstream 94299 73210459 ~ 73210813 (-) True G1408611
XM_021567036.2 mRNA downstream 15470 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XM_021567037.2 mRNA downstream 15470 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XM_036947748.1 mRNA downstream 68064 73040535 ~ 73047672 (-) True LOC110492600
XM_036947746.1 mRNA downstream 185970 72904370 ~ 72929766 (-) False LOC110491158
XM_036947745.1 mRNA downstream 185971 72904370 ~ 72929765 (-) False LOC110491158
XM_036947753.1 mRNA upstream 2725 73118885 ~ 73142587 (-) False LOC110491162
XM_036947752.1 mRNA upstream 2725 73118885 ~ 73144288 (-) False LOC110491162
XM_021567040.2 mRNA upstream 31136 73147296 ~ 73167393 (-) False LOC110492609
XR_005036624.1 mRNA upstream 118356 73234516 ~ 73236615 (-) False LOC118939590
XM_036947780.1 mRNA upstream 593969 73710129 ~ 73742096 (-) False LOC110492449
TU1608117 other downstream 677889 72435429 ~ 72437847 (-) True G1407755
TU1607973 other downstream 783021 72331806 ~ 72332715 (-) True G1407628
TU1606876 other downstream 1569891 71536312 ~ 71545845 (-) False G1406752
TU1606851 other downstream 1571235 71534565 ~ 71544501 (-) False G1406752
TU1609186 other upstream 114652 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 653696 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 653944 73770104 ~ 73777357 (-) False ppdpfb
TU1609392 other upstream 653990 73770150 ~ 73777357 (-) False ppdpfb
TU1609395 other upstream 653990 73770150 ~ 73777357 (-) False ppdpfb

Expression Profile