RNA id: TU1609403


Basic Information

Item Value
RNA id TU1609403
length 220
lncRNA type sense_over
GC content 0.45
exon number 1
gene id LOC110492449
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73710129 ~ 73742096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaatgtGTGCTAAAGGGGTATGTTCACCATGTTTGTGCCACAGATACTTGAAGACCATCCCTATGACAGATAGTGaattggggtgtgtgtgtgtgtgtactgaggaGGTTCTGCTTTTTGGGGTCGTCTGCCTCTGAGGCTCGCAGTGTTTGTCTTTTTAAGTCTTTCTTTGATACACTGGAAGTTTTGGGATTTATCTTTGACctaatatcccccccc

Function

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609495 lncRNA downstream 6926 73701879 ~ 73703389 (-) True G1408875
TU1609496 lncRNA downstream 7198 73702856 ~ 73703117 (-) True G1408876
TU1609489 lncRNA downstream 29629 73680485 ~ 73680686 (-) True G1408869
TU1609487 lncRNA downstream 32841 73677159 ~ 73677474 (-) True G1408867
TU1609486 lncRNA downstream 36382 73673638 ~ 73673933 (-) True G1408866
TU1609501 lncRNA upstream 20106 73730640 ~ 73731220 (-) True G1408880
TU1609521 lncRNA upstream 68829 73779363 ~ 73779635 (-) True G1408900
TU1609529 lncRNA upstream 79361 73789895 ~ 73790166 (-) True G1408904
TU1609534 lncRNA upstream 90976 73801510 ~ 73804154 (-) True G1408906
TU1609536 lncRNA upstream 91547 73802081 ~ 73803916 (-) True G1408907
XR_005036624.1 mRNA downstream 473700 73234516 ~ 73236615 (-) False LOC118939590
XM_021567040.2 mRNA downstream 542922 73147296 ~ 73167393 (-) False LOC110492609
XR_005036623.1 mRNA downstream 566027 73115423 ~ 73144288 (-) False LOC110491162
XM_021566779.2 mRNA upstream 59648 73770182 ~ 73777432 (-) False ppdpfb
XM_021566780.2 mRNA upstream 59648 73770182 ~ 73777432 (-) False ppdpfb
XM_036947792.1 mRNA upstream 72465 73782999 ~ 73822230 (-) False LOC110492451
XM_036947795.1 mRNA upstream 72465 73782999 ~ 73822231 (-) False LOC110492451
XM_036947785.1 mRNA upstream 72465 73782999 ~ 73822232 (-) False LOC110492451
TU1609186 other downstream 477361 73230812 ~ 73232954 (-) True G1408615
TU1608117 other downstream 1272468 72435429 ~ 72437847 (-) True G1407755
TU1607973 other downstream 1377600 72331806 ~ 72332715 (-) True G1407628
TU1606876 other downstream 2164470 71536312 ~ 71545845 (-) False G1406752
TU1609394 other upstream 59322 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 59570 73770104 ~ 73777357 (-) False ppdpfb
TU1609392 other upstream 59616 73770150 ~ 73777357 (-) False ppdpfb
TU1609395 other upstream 59616 73770150 ~ 73777357 (-) False ppdpfb
TU1609393 other upstream 59828 73770362 ~ 73777357 (-) False ppdpfb

Expression Profile