RNA id: TU1609395


Basic Information

Item Value
RNA id TU1609395
length 1052
RNA type TUCP
GC content 0.45
exon number 5
gene id ppdpfb
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73769856 ~ 73777432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGAGTGTCTTCCTCGTAGTATAAAACCACTCGCCAATCCTTCATTCTGGCAACAACAAGAAACGAACATTTACTGCGAATATAGTTCACTGCTTATTACAGGGTCGTTAGAGAGGGTTTTATTTACACCAAACAACATCTATTTTATAAATGGGCCCCGTCGTCCAAGCCTTCACTCCCTTACTCGTCTCGCAGATTGCCTTGGGTGCTGTTTAACATCAGCACGTCTCTTGGGTAACAAACAAAAGAAAGGGTTTCTATCTAACGCAATATTCAACACGATCTGAAGAATGGCAGCGATCAACGCAGGCGGTTCTCTTGTTGCTACCAATGACTACTACCGAAGGCGCATCGGCTCCACCTCCAGCAGCAGCTCCTGTGGCAGTTCAGAGTACAGTGGGGAGGTCATTCCACACCATCCAGGTCTGCCCAAACAAGACTCTGGACATTGGTGGTCCAGCTTCTTCTTTGGGAAGCAGAACCAGCCAGGAATGACCACTCTGACGGAGGAGGCCAAGCAGAAGGCGGCCATGACTGTGACCAACGGCCAGGTGACCTGCGTTGCCAgggagatggtgaggaagaggcagGTCAGCGAGGGCAGCAAAGCCGGGACGTCCGAGCCGGGGAGTTCACCCCCGTCCTGAGAGATGGGACAAACGCTAGGAGACCGAGGCTGCGTCCTCATTCCCTAAACCCTTGATTCTGTTCCATCCTCCACACTACATAGAATGTATGCCTGTTACATTGCTTCATACTAGGTAGTATGGATATTGGAACATAGccttttttttgtttgtcttAGTAGGACAGGCTGACAATgattgttgtttttattttgtatcctttttttaaaaagttttttttaaatctatgaacaaaatatatatatataaatatataaacttttttttacatttgtgtttGTCTGTAACACTGTGGTGCCCTCAACTTTTGTTAACTTCTCCACTTTGTCACCCTGTGATTGCAGATGTCTAGTAAATGTCGCCTCAGCCTAATTATGGACTTGTCTGTCATTTTTCTGTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609501 lncRNA downstream 38930 73730640 ~ 73731220 (-) True G1408880
TU1609403 lncRNA downstream 59616 73710315 ~ 73710534 (-) True LOC110492449
TU1609495 lncRNA downstream 66761 73701879 ~ 73703389 (-) True G1408875
TU1609496 lncRNA downstream 67033 73702856 ~ 73703117 (-) True G1408876
TU1609489 lncRNA downstream 89464 73680485 ~ 73680686 (-) True G1408869
TU1609521 lncRNA upstream 2006 73779363 ~ 73779635 (-) True G1408900
TU1609529 lncRNA upstream 12538 73789895 ~ 73790166 (-) True G1408904
TU1609534 lncRNA upstream 24153 73801510 ~ 73804154 (-) True G1408906
TU1609536 lncRNA upstream 24724 73802081 ~ 73803916 (-) True G1408907
TU1609540 lncRNA upstream 35359 73812716 ~ 73812961 (-) True G1408911
XM_036947780.1 mRNA downstream 28054 73710129 ~ 73742096 (-) False LOC110492449
XM_036947781.1 mRNA downstream 28054 73710129 ~ 73742096 (-) False LOC110492449
XR_005036624.1 mRNA downstream 533535 73234516 ~ 73236615 (-) False LOC118939590
XM_021567040.2 mRNA downstream 602757 73147296 ~ 73167393 (-) False LOC110492609
XM_036947752.1 mRNA downstream 625862 73118885 ~ 73144288 (-) False LOC110491162
XM_036947792.1 mRNA upstream 5642 73782999 ~ 73822230 (-) False LOC110492451
XM_036947795.1 mRNA upstream 5642 73782999 ~ 73822231 (-) False LOC110492451
XM_036947785.1 mRNA upstream 5642 73782999 ~ 73822232 (-) False LOC110492451
XM_036947786.1 mRNA upstream 5642 73782999 ~ 73822232 (-) False LOC110492451
XM_036947787.1 mRNA upstream 5642 73782999 ~ 73822232 (-) False LOC110492451
TU1609186 other downstream 537196 73230812 ~ 73232954 (-) True G1408615
TU1608117 other downstream 1332303 72435429 ~ 72437847 (-) True G1407755
TU1607973 other downstream 1437435 72331806 ~ 72332715 (-) True G1407628
TU1606876 other downstream 2224305 71536312 ~ 71545845 (-) False G1406752
TU1609671 other upstream 395516 74172873 ~ 74182580 (-) True rps21
TU1609691 other upstream 418168 74195525 ~ 74195951 (-) True G1409044
TU1610173 other upstream 959076 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 959076 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 959076 74736433 ~ 74739189 (-) False G1409407

Expression Profile