RNA id: XM_036947794.1


Basic Information

Item Value
RNA id XM_036947794.1
length 5198
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110492451
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73782999 ~ 73822236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGGTTTCCGGTGCGagacgtaatgaatacaccccttgTTCGTGGACGTCTCCCTCGACGTGTTTTGTTATTGTGGAATCCTGTCAAACACACGGAGAGGCTCAAAGGTTTCAATTGATTGAGTGGACGGCGCTGTGCTAGCcacctttaaaaatatatataatctaacttacatatttatttttgtgTGTTGCTATAAAGCTCCCCAAAAAACTCCGCTCAATTCGACGCCATGGACGTTGGTCAAGcATGCCCCCctgcccccactctctctcttgaCCCAGACATCAACCTGAACTCTCCCAACAAGGGCCTGGGCCCTGCAGGAGGAGCAGACCCTCTGACTGATGTCCCCGTGGAGGGCGGAGCCGTGGGGGTATCCTCCATCAACACGTTACCCCCGGGGCTCACAGAGGAGGAGGCTGAGGAGATCCGCTCTGAGCTAGTCAAGGTGGAAGAGGAGATCAGCACCCTGAGACAGGTGCTCCTGGCCAAAGAGAAGCATTCTGCTGATCTGAAGAGGAAGCTGGGGCTGAGCCCCCTCAACGAGCTCAAACAGAACCTCACCAAGGGATGGCAGGATGTCCAGACCTCTAATGCGTACAAGAAGACTCAGGAGACCCTGTCTGTGGCGGGACAGAAGACCACTGCTGCCTTCTCCACCATGGGAACTGCCCTCAGCAGGAAACTGGGAGACATGAGAGCGCTGCCGTTCTCTAACTCCTTTAGAAACTCTCCAACCTTCAAGTCGTTTGAGGACAAAGTTGGAAACATCAAGtACAAGGTGGTTGGAGCCAGAGGTAACGGTGAAGCTGTCCAGTCCCCAACCGACACGAACCCTGTTCAGGACAACGCACCCTTCTGaagatcacccccccccccccacacacacactcccctcctcctctctctcatcaccgGGACTGTGACATCATCATTAAGCGCCTCATCACTGAGTGACACATGACCTTCGGCCTAAAGAAGTCACCTTCTAATCTCCACATTACTCACTACTGCCTCCCTCGCCTGACCTGGAAAACGTAGTGCCCTatatcattaatactactactatcatccCCTAGCCCCTACTCCGTAGCCCCTTACCCTCTCCCTTGTGGAGAACTGAAAGGACTGGAGTGATGTGTGCAGTATGGCAACAATTCCACCTATGCTATGACAGGTCAAGGTGGGAGGAGTCACTACTATATTGTCTAAACCAATAGGTTGATTTGTTGCATATTGCTTACTCTTATCTAGTTCcttcagatctccacaagtgccTAGGAGGTTAGGGGCTAAAGGTCCGCTTGGAAATCTCCCTCCTCAGCGCCCCTCCTCGCCTACTAAGAGCATGTGCATATCTCATCTCACTGTGCAAATAATACAAACTACCGCAAAATACAACCTGAGGTTACGTAACATCAAATCACCACagcttgtaaaaaataaaataaaaagacaaCTACGGTAAACCATTTTGTATTATAAAACGATTTTACACTGCTTTGCATAATGTTTTTACATGACTTATctgtatgtataaatatatatgaatAAATATATTGTGAACCATTACTGCCAGTCGGCATTCATCGGTAGGTATGGCTGACGTGGAGGCTCAAACAAGAAGGCAAATAAAAAATCACTACGACTACAACAATGATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGAgtttgatatcagtttggtgcccTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCTGTTTGGTGCCCTGCTGAGAgtttgatatcagtttggtgcccTGCTGAGCGTTCGGTTTCTGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATTTCTGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTTGGTGCCCTGCTGAGAGTTCGATTTCTGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTTGGTGCCCTGCTGAGAGTTCGATTTCAGTTTGGTGCCCTGCTGAGAGTTCGATTTCTGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTCCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAATTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGAgtttgatatcagtttggtgcccTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCTGTTTGGTGCCCTGCTGAGAgtttgatatcagtttggtgcccTGCTGAGCGTTCGGTTTCTGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGAgtttgatatcagtttggtgccctgctgagagtttgatatcagtttggtgcccTGCTGAGCGTTCGGTTTCTGTTTGGTGCCCTGCTGAGCGTTCGGTTTCTGTTTGGTGCCCTGCTGAGAgtttgatatcagtttggtgccctgctgagagtttgatatcagtttggtgcccTGCTGAGCGTTCGGTTTCTGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATTTCTGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTTGGTGCCCTGCTGAGAGTTCGATTTCTGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTTGGTGCCCTGCTGAGAGTTCGATTTCAGTTTGGTGCCCTGCTGAGAGTTCGATTTCTGTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTTGGTGCCCTGCTGAGAGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTCCGATATCAGTTTGGTGCCCTGCTGAGAGTTCAATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTCCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGCGTTCGATATCAGTTTGGTGCCCTGCTGAGAGTTCGATTTCTGTTTGGTGTGTTTCTACAATGTGGAAGCAAGGCTTTAGTGTAAAGACCAGTTTCTACCTTCATCAGATGGCTATCTTTAGGCCTTACTCTTTCAGTCTTATTGCTTTCTGTTACTTTGCTGgtataaaataaatgtaatttttttttctCTATTCTTTCTTAATCTGGAAGTTGTAGAATATCGTTTAGCCTGGGAGGTGCTTGCGTTCTCTTTTTTATTTTGTAGGCTCAAGTGTTTACTGTTATTGTGCCACATCTGAAATGATCAACTGTCAAATACAGTCCAGACAGCTCTCTGTGTCCACCATTTTATTCTAAGAATTGTCCTCGTGCCTCAGGCGTAACTCCACCACACACTTGTATGCGCACACTCCTGTACCCAGACGTACTCGTACCCACCCTGTGACTAGCTCTACTAGTTATTTATATATCAACAACACTTCCTGTTTTGCCAGTGTGCACTAAACCCAACCTACTTTACActataaaacaaaaaacaaactacTAGCTGTTGCCTAGCTTTTACAACCTTCAACACAACTTGAAATAGCTTCTGTTGGTTTGGTAACAACGTCTCTTTTTGTTGTTTTCAACATGATGTATCTGTGGAGAttgtattccccccccccccaatttagTGTTCCATTTCTATCCAGGGGCTGGAGTATTAATTTACCCTTTAACTTCTTTTATAATTATAATGTTGTATTATTTAGTAGTGATGATCATATTTAGGTTATGTGTTTTTTGACGTCTCATTCTTGGTTGGAGTTTAAGGTTTGTTTTATATTTAATAGCCATCTGTAAATCGTTGCCAATCTGTCATTTACCTGCCTGTTACAGATCTCTCTCACTTTCAAATTAATACCGTAGTTATTATATAGATGGTAGGTCTCTGCTACGAGCTGGACCGGTTTCTCCACCGATCTGGACCGGTTTCTCCACCGATCTGGACCGGTTTTCCCACCGATCTGGACCGGTTTTCCCACCGATCTGGACCGGTTTCCCCACCGATCTGGACCGGTTTTCCCACCGATCTGGACCGGTTTCCCCACCGATCTGGACTGGTTTTCCCACCGATCTGGACTGGTTTTCCCACCGATCTGGACTGGTTTTCCCACCGATCTGGACCGGTTTCCCCCAGACACggatcagaccagagaatttctGTTAGGAATGCGTTTTTAGTCCAGGATTTAGCTTAATCTGTTGGCAGACAGGGCCTCCCAAAGGCAACCCAATTCATGTTTTGTCCGATTTATTGGCAAAAGATCTGATCGGTCAAAAATACCAATTTTAGTGGcgaaagatcagaattgggctgcctgtgtaaacgcagccttagtATATTCCGTTGTCTGTTGTCTCTGGTTATGACGGAGCAAGGGGAAAGGCAGATGTATCCCATAGATTGTGTAGAGCTGCAAAAAACATTGTTTGGGTCTAATGTACATTTTTGGGACACCACAGCTGAATTTGTTAAAACACATTATTGAAGGCATGTACAATGTTGGGAATgataggaatatatatatatatatatagctttaTTTAGAATGGGAGCCTAGTTTTAGACCTTTTAAATGGATATGAGAATGGTGGATGAATTCAACTGTTGGTTTGTCATATGTTGAGAATATCAATAAAGCATTCCTTTAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609521 lncRNA downstream 3364 73779363 ~ 73779635 (-) True G1408900
TU1609501 lncRNA downstream 51779 73730640 ~ 73731220 (-) True G1408880
TU1609403 lncRNA downstream 72465 73710315 ~ 73710534 (-) True LOC110492449
TU1609495 lncRNA downstream 79610 73701879 ~ 73703389 (-) True G1408875
TU1609578 lncRNA upstream 160986 73983219 ~ 73983984 (-) True G1408946
TU1609589 lncRNA upstream 185429 74007662 ~ 74008368 (-) True G1408953
TU1609592 lncRNA upstream 191974 74014207 ~ 74014553 (-) True G1408955
TU1609631 lncRNA upstream 272178 74094411 ~ 74094682 (-) True G1408990
TU1609673 lncRNA upstream 338990 74161223 ~ 74161456 (-) True G1409027
XM_021566779.2 mRNA downstream 5567 73770182 ~ 73777432 (-) False ppdpfb
XM_021566780.2 mRNA downstream 5567 73770182 ~ 73777432 (-) False ppdpfb
XM_036947780.1 mRNA downstream 40903 73710129 ~ 73742096 (-) False LOC110492449
XM_036947781.1 mRNA downstream 40903 73710129 ~ 73742096 (-) False LOC110492449
XR_005036624.1 mRNA downstream 546384 73234516 ~ 73236615 (-) False LOC118939590
XM_036947796.1 mRNA upstream 10635 73832868 ~ 73867578 (-) True LOC110492453
XM_036947797.1 mRNA upstream 56955 73879188 ~ 74155898 (-) True lama5
XM_036947798.1 mRNA upstream 350726 74172959 ~ 74182639 (-) False rps21
XR_005036626.1 mRNA upstream 360947 74183180 ~ 74197780 (-) True LOC118939593
XR_005036627.1 mRNA upstream 392295 74214528 ~ 74217266 (-) True LOC118939594
TU1609397 other downstream 5642 73770104 ~ 73777357 (-) False ppdpfb
TU1609671 other upstream 350640 74172873 ~ 74182580 (-) True rps21
TU1609691 other upstream 373292 74195525 ~ 74195951 (-) True G1409044
TU1610173 other upstream 914200 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 914200 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 914200 74736433 ~ 74739189 (-) False G1409407

Expression Profile