RNA id: XM_036947798.1



Basic Information


Item Value
RNA id XM_036947798.1
length 436
RNA type mRNA
GC content 0.52
exon number 6
gene id rps21
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74172873 ~ 74182639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCGCCCATAGGAAGTAATTGCTTGCGACACCAGTCGAACTGGTTTTAACTTCCGGTAACTATACGCTCCCTTTCCTGTCAGCCATTTGCGATCAACGATCGAGTTGACCGATCATCACCCAAAATCAGAATGCAGAACGACGCCGGTGAATTCGTGGACCTGTACGTCCCACGCAAATGTTCTGCGAGCAACAGGATCATCGGAGCAAAGGACCACGCCTCCATCCAGATCAACATTGCTGAGGTTGACAAGGTAACCGGTCGCTTCACCGGCCAGTTCAAGACCTACGCCATCTGCGGCGCCATTCGTAGAATGGGCGAGGCTGACGACTCCCTCCTGAGGCTGGCTAAGACCGACAGCATCGTGTCGAAGAACTTCTAGTCTGGGACATGCAGCTCTGGGATCTCTTTGTAAAATAAAAACCTGTCAAATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1609681 lncRNA downstream 1667 74170851 ~ 74171292 (-) True G1409035
TU1609679 lncRNA downstream 3739 74168857 ~ 74169220 (-) True G1409033
TU1609678 lncRNA downstream 4159 74168505 ~ 74168800 (-) True G1409032
TU1609674 lncRNA downstream 10597 74161576 ~ 74162362 (-) True G1409028
TU1609673 lncRNA downstream 11503 74161223 ~ 74161456 (-) True G1409027
TU1609686 lncRNA upstream 5514 74188153 ~ 74188354 (-) True G1409039
TU1609700 lncRNA upstream 19477 74202116 ~ 74202488 (-) True G1409053
TU1609809 lncRNA upstream 48265 74230904 ~ 74233373 (-) False G1409148
TU1609808 lncRNA upstream 49848 74232487 ~ 74233373 (-) True G1409148
TU1609813 lncRNA upstream 70699 74253338 ~ 74254210 (-) False G1409150
XM_036947797.1 mRNA downstream 17061 73879188 ~ 74155898 (-) True lama5
XM_036947796.1 mRNA downstream 305381 73832868 ~ 73867578 (-) True LOC110492453
XM_036947788.1 mRNA downstream 350723 73782999 ~ 73822236 (-) True LOC110492451
XM_036947791.1 mRNA downstream 350726 73782999 ~ 73822233 (-) False LOC110492451
XR_005036626.1 mRNA upstream 541 74183180 ~ 74197780 (-) True LOC118939593
XR_005036627.1 mRNA upstream 31889 74214528 ~ 74217266 (-) True LOC118939594
XM_036947799.1 mRNA upstream 34681 74217320 ~ 74331109 (-) True LOC110510377
XM_036945803.1 mRNA upstream 156616 74339255 ~ 74374071 (-) True ccm2l
XM_036947800.1 mRNA upstream 205301 74387940 ~ 74450972 (-) True LOC110518683
TU1609397 other downstream 395602 73770104 ~ 73777357 (-) False ppdpfb
TU1609691 other upstream 12886 74195525 ~ 74195951 (-) True G1409044
TU1610173 other upstream 553794 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 553794 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 553794 74736433 ~ 74739189 (-) False G1409407
TU1610200 other upstream 553794 74736433 ~ 74739189 (-) False G1409407

Expression Profile