RNA id: XR_005036626.1


Basic Information

Item Value
RNA id XR_005036626.1
length 1466
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118939593
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74183180 ~ 74197780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgttttcctgttgtcacgatcgtcgtatgaagcggaccaaaatgcagcgtgAAAGAGCGAGCGCTGATCGGGTCACATGCATGTGGAAGAAGTGCTGCTTGACGTCCATAAATAGCCGATGTGACGACTGGACAGGCATCACATTTTCAGGTGCAAGATACCAGACCACTCTGAGATCCACAGTACTGTCAGCAGCAggcagtaccagtagtagtagtagtagtagtagtattcggaccaacactttgcatttCTTCAGAAAGACTCAGAAGACATCGTTTGAGGCCGCAACAATGAAGTTCACCATGATTTTGCTGGGTTTGCTGCTGTCCTGTCTAGTCGTTCTGTGTAGAAGTTCTCAATCCCACTGCTGTCCTGCCAATGAAAGGTGCACAATTGTGACTCTACAACACAGACTGACGCAACCGAAGGTTCCCCTCCATGCCGCTAAGATTGAGGAAACCTCTCTGGCTCCCTGGAATTACACATATAACAAGAACGACAACAGGGTCCCACAAATCATCAGGAATGCCACCTGCTCAGATTGTATGGTCAAAGGACTGAAGGCAGTGCCGATTCAATACGAGATGAACGTTTTTCACAGGAAAAAATGTGGAAGTACATTTGTTATTTGTATGTGTCCTTGCACGGTTAATTTAGGCTGCACCTGTGTGAAAGAGAAGAAGTGTCACAGCATTTCTGCTAGATGTCTTCCTGAGCAGAGGAGTGGATAGGCCTACTGTGTAGTGGACATCCCCCAaaagaaccctattccctacatagtgcactactttagaccagagccctatggcacagtattccctatatagtgcactactttagatcagggccctatggcaccctattccctatatatagtgcactactttagaccagataaCCAATTACTGCTGTAATATGTGCTGTAGTGTGGATGCTTCCAGAGATCTATTACTATTATCTGTTATTACTCTAGATTTACTCTACCTCCTTCCTTGACCTGTGATATGTGATTgtcttacctaccttagttgaatgcaccgACAGTAGGTGGCTCTgtataagagagtctgctaaatgactcactactgtaagtggctctggataagagagtctgctaaatgactcactactgtaagtctctctggataagagagtctgctaaattattcactactgtagtgtctctggattaGAGAGTCTGCGAAATgattcactactgtaagtctctctggataagagagtctgctaaatgactcactactgtaagtctctctggataagagagtctgctaaattattcactactgtagtgtctctggattaGAGAGTCTGCGAAATGATTCACTACTGTAagtatctctggataagagagtctgctaaatgacccactactgtaagtctctctggataagagagtctgctaaatgacccactactgtagtggatcagagagtctgctaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609681 lncRNA downstream 11888 74170851 ~ 74171292 (-) True G1409035
TU1609679 lncRNA downstream 13960 74168857 ~ 74169220 (-) True G1409033
TU1609678 lncRNA downstream 14380 74168505 ~ 74168800 (-) True G1409032
TU1609674 lncRNA downstream 20818 74161576 ~ 74162362 (-) True G1409028
TU1609673 lncRNA downstream 21724 74161223 ~ 74161456 (-) True G1409027
TU1609700 lncRNA upstream 4336 74202116 ~ 74202488 (-) True G1409053
TU1609809 lncRNA upstream 33124 74230904 ~ 74233373 (-) False G1409148
TU1609808 lncRNA upstream 34707 74232487 ~ 74233373 (-) True G1409148
TU1609813 lncRNA upstream 55558 74253338 ~ 74254210 (-) False G1409150
TU1609814 lncRNA upstream 55962 74253742 ~ 74254210 (-) True G1409150
XM_036947798.1 mRNA downstream 541 74172959 ~ 74182639 (-) False rps21
XM_036947797.1 mRNA downstream 27282 73879188 ~ 74155898 (-) True lama5
XM_036947796.1 mRNA downstream 315602 73832868 ~ 73867578 (-) True LOC110492453
XM_036947788.1 mRNA downstream 360944 73782999 ~ 73822236 (-) True LOC110492451
XM_036947793.1 mRNA downstream 360947 73782999 ~ 73822233 (-) False LOC110492451
XR_005036627.1 mRNA upstream 16748 74214528 ~ 74217266 (-) True LOC118939594
XM_036947799.1 mRNA upstream 19540 74217320 ~ 74331109 (-) True LOC110510377
XM_036945803.1 mRNA upstream 141475 74339255 ~ 74374071 (-) True ccm2l
XM_036947800.1 mRNA upstream 190160 74387940 ~ 74450972 (-) True LOC110518683
XM_036945804.1 mRNA upstream 460018 74657798 ~ 74757404 (-) True LOC110512152
TU1609671 other downstream 600 74172873 ~ 74182580 (-) True rps21
TU1609397 other downstream 405823 73770104 ~ 73777357 (-) False ppdpfb
TU1610173 other upstream 538653 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 538653 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 538653 74736433 ~ 74739189 (-) False G1409407
TU1610200 other upstream 538653 74736433 ~ 74739189 (-) False G1409407
TU1610207 other upstream 538653 74736433 ~ 74739189 (-) False G1409407

Expression Profile