RNA id: XR_005036627.1


Basic Information

Item Value
RNA id XR_005036627.1
length 2651
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118939594
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74214528 ~ 74217266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaggagagaCAAATTAAGTAGTTTAAAGGGAgcagagatggaaagaaagaagatgagagagaagtTAAGAGAGAGATGATGTAGGTAAAGGATTAGTTATGTCCCGTGACGCCCATGAAACCCTTAGCACTGACCACACTCTCATAATCAGTAACAATACTGGTATTGACCCTCACGAGAAGCAGAAACGACACCTACGATGTCATCAAACCACAGCACATCTGTTTCTACACCTTCTAAACCTGAACATGTCCATCCTGCCATGTTCCCCTAGGGGGCGGTCAAGTTCAGCAGTAGCATTGGGATTAAATGTAAGGTGACTTTACCACAGGGATACCAGTTACTAGTTAGCAACATGAGTTGTGACTTTACCACAGGGATACCAGTTACTAGTTAGCAACATGAGTTGTGACTTTACCACAGGGATACCAGTTACTAGTTAGAAACATGAGTCGTGACTTTACCACAAGGATACCAGTTACTAGTTAGCAACATGAGTCGTGACTTTACCACAAGGATACCAGTTACTAGTTAGCAACATGAGTCGTGACTTTACCACAGGGATACCAGTTACTAGTTAGAAACATGAGTCGTGACTTTACCACAAGGATACCAGTTACTAGTTAGCAACATGAGTCGTGACTTTACCACAGGGATACCAGTTACTAGTTAGAAACATGAGTCGTGACTTTACCACAAGGATACCAGTTACTAGTTAGAAACATGAGTCGTGACTTTACCACAAGGATACCAGTTACTAGTTAGCAACATGAGTCGTGACTTTACCACAAGGATACCAGTTACTAGTTAGCAACATGAGTCGTGACTTTACCACAAGGATACCAGTTACTAGTTAGCAACATGAGTCGTGACTTTACCACAAGGATACCAGTTACTAGTTAGCAACATGAGTCGTGACTTTACCACAGGGATACCAGTTACTAGTTAGTAGtaatacttctctctctccctcctgccagTGTGTTAAAGGGAAAACAAATAACGTCACACAAACATTTAACcaaaaatacatttaatgtaTTTATCCTTTCTGAtatgtatatttattatattgtaTCAACGCAGCATAAGGGATATTTTATATTATAACCCTTGTAGCTTAACTCACACAGGTCTTATTATCCACCTTCAGCCCTGTTTATACTTGGTTCTAACatgcgtcctttgtcctgatcttggcCACATTCTGATTGTGATTAGCTCTTCCTGACCACTTCCAGAGGTAGTCAAAGATGCATCCAGTACGGATACGGCCTTGAAGTGTCAACGTATCCTGACGACGAAAGCGTATACATTCGGTCCTCTCAAATAAATCACACCGGCCAGTTGAGGTAGTaatgccgcattcaaaacaactgggaactcggaattCGGGAACTTGGATATCGCCGGCGTCCGAcgtcagtgcgttcaagacaacttggAGCTACAACTGGGAAAAAATTGTTTCgcacggtcatccaactcggaattccaagttggaaaCTCGgtcatctttctagagctctgactttccgacctgaagatcactgacgtcattatTTGACCTTGGTTTTTttccagttcccagttgtcttgaaagcaccacaaTTATGGACAACGATACCGCTACAATTCATACAGAAATAAGATCTTGGTCTTCATTAAAAACCGGACGAACCCAGATCTGGATGGGAACGGAAGAACGTGGTGTCCAGTTGATTCAGATCTGGATGGGATCGGAAGAACCCGGTGTCCAGTTGATTCAGATCTGGATGGGATCGGAAGAACCCGGTGTCCAGTTGATTCAGATCTGGATGGGATCGGAAGAACCCGGTGTCCAGTTGATTCAGATCTGGATGGGATCGGAAGAACCCGGTGTCCAGTTGATTCAGATCTGGATGGGAACGGAAGAACCCAGTGTCCAGTTGATTCAGATCTGGATGGGATCGGAAGAACCCAGTGTCCAGTTGATTCAGATCTGGATGGGAACGGAAGAACCCAGTGTCCAGTTGATTCAGATCTAGATGGGATCGGAAGAACCCGGTGTCCAGTTGATTCAGATCTGGATGGGATCGGAAGAACCCGGTGTCCAGTTGATTCAGATCTGGATGGGATCGGAAGAACCCGGTGTCCAGTTGATTCAGATCTGGATGGGAACGGAAGAACCCGGTGTCCAGTTGATTCAGATCTGGATGCGGTATTGGGTGACCATCCCACACCCGCCCACCATTCATTCTGGACAGTGCTGTGGTAATATCAAGGGAAAGCTGCTGTGAATAGTTTATATATCACATAAGAAAATTATGCAGTGGTATTATAAAAAAGTGGGTTGTCTATGTAAGAGTTAggcctccacattataccttgatataaaggtacaggggaacattagatctctacattataccttgatcttaaggtacaggggaacattagatCTCTACATTATACCTTGTCGTGAACTGCTCTCTCCTGTTGCAACTCAATCATAGTCCATCTCATGCATCCCCAATACATTTTCAGTTCAGTTTAAATTCTGTAATGCTGTTATATCAGTCGATCAACCCTCGATGAGTGAAAGAGACTCTGTTACTGAAGTATAACTAATCAATGATTTGGAACAAACCAAAGCCATGGTCGTTCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609700 lncRNA downstream 12040 74202116 ~ 74202488 (-) True G1409053
TU1609686 lncRNA downstream 26174 74188153 ~ 74188354 (-) True G1409039
TU1609681 lncRNA downstream 43236 74170851 ~ 74171292 (-) True G1409035
TU1609679 lncRNA downstream 45308 74168857 ~ 74169220 (-) True G1409033
TU1609678 lncRNA downstream 45728 74168505 ~ 74168800 (-) True G1409032
TU1609809 lncRNA upstream 13638 74230904 ~ 74233373 (-) False G1409148
TU1609808 lncRNA upstream 15221 74232487 ~ 74233373 (-) True G1409148
TU1609813 lncRNA upstream 36072 74253338 ~ 74254210 (-) False G1409150
TU1609814 lncRNA upstream 36476 74253742 ~ 74254210 (-) True G1409150
TU1609817 lncRNA upstream 41543 74258809 ~ 74259408 (-) True G1409153
XR_005036626.1 mRNA downstream 16748 74183180 ~ 74197780 (-) True LOC118939593
XM_036947798.1 mRNA downstream 31889 74172959 ~ 74182639 (-) False rps21
XM_036947797.1 mRNA downstream 58630 73879188 ~ 74155898 (-) True lama5
XM_036947796.1 mRNA downstream 346950 73832868 ~ 73867578 (-) True LOC110492453
XM_036947788.1 mRNA downstream 392292 73782999 ~ 73822236 (-) True LOC110492451
XM_036947799.1 mRNA upstream 54 74217320 ~ 74331109 (-) True LOC110510377
XM_036945803.1 mRNA upstream 121989 74339255 ~ 74374071 (-) True ccm2l
XM_036947800.1 mRNA upstream 170674 74387940 ~ 74450972 (-) True LOC110518683
XM_036945804.1 mRNA upstream 440532 74657798 ~ 74757404 (-) True LOC110512152
XM_036945805.1 mRNA upstream 683221 74900487 ~ 74905798 (-) False LOC118939467
TU1609691 other downstream 18577 74195525 ~ 74195951 (-) True G1409044
TU1609671 other downstream 31948 74172873 ~ 74182580 (-) True rps21
TU1609392 other downstream 437171 73770150 ~ 73777357 (-) False ppdpfb
TU1610173 other upstream 519167 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 519167 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 519167 74736433 ~ 74739189 (-) False G1409407
TU1610200 other upstream 519167 74736433 ~ 74739189 (-) False G1409407
TU1610207 other upstream 519167 74736433 ~ 74739189 (-) False G1409407

Expression Profile