RNA id: XM_036945803.1


Basic Information

Item Value
RNA id XM_036945803.1
length 2344
RNA type mRNA
GC content 0.57
exon number 12
gene id ccm2l
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74339255 ~ 74374071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACACACACGTCCCAGCCGTCAGCCCTTAGCCCAAAACCAGCCCGCACCTCACAGAGAGACGGcacttaccacacacacacacgtcccagCCGTCAGCCCTCAGCCCAAAACCAGCCCACAGAGAGACGCCACTTACCACACACCATTGCCTACTTCAGGGATGGACTATGAGCCCACTAAGAAAGCCAAGAAGggCTTTGTATCACCCATCAAGCTCCTGGTCTTCTCTAAGTCGGggcgcagacagacagacaggagtagtGTGTCTCGTAGACCACTCCACACCGTACCCCTCTACCCTCCAGACTTCCTCATCCACCCAGAGAGACTCATCTATGACTATGTAGAGAAGGAGGTCAAGTTCCTGGGTCACCTGACTTGGGTGTCGTGCTCTCTAAACCCTTCCAGTAGAGATGAACTGCTGCAGCTCCTGGACACAGCCAGGCAGCTGAAGGTGCTTCCCCTGAAGACCAGCGTTGAGCAGGACTGTATCCTGAGCCTGTCAGCCCGATGTCTTCTTCTGACCTGGCGAGACAACGAGAAACTGCTGCTGAGAATCCCTACGCACGAGATCGCTGCTGCCTCCTACCTGAGAGATGACGCACTGCACCTCCTGGTGCTCAAAACAGGCAAGGCAGCTCAcctccatcctcttcctcccccagGTTTAAAGGTAGATACCGTCCTGGCGGGAGGTAACAGCCTGGAGAAGAGAAACCCAGGAGGCATCGAGGCTCGTCGTCAGACCATGAGCAACTCTGACCCACGTCCAGCAGGTGGCACTATGGAGCGCAGACACACCATCTGTGGAGTGGACTGGAAGAACCACAAACCCTCCTCCAagcagccacagccacagccgcAACCCAACCCAGCCCTGGTGCAGGGtgctgggggaggagggggaggaggagctgGTGGAGTGGCTGGAGgtgctGGTGGCAGCCTAGAGAGGCAGCCCAGGGTAGGAGGAAGCTGGGAGCGGAGACAGACCAGGAAGCCTGGAGGAGGAAGCTGGGAGAAGAGGCCAGTGAGCGGGAGCTGGGACCGACCCAGACCGGTCGGGGGGAGTTGGGAGAAAAGACACGGGGCCAGTGGAGTTGGAGGAGGTAGCTGGGAGAAGAGGCATGGAGCTGGAGGGAAGCCTGGAGGCAGCTGGGAGAGGAAGCATCCCCAGGGAGGGAGTTGGGAACGCAGGCAGGCCTGTACAGGGAgttgggagagggggaagagttaTGGAAGCTGGGAAAGGAGAAACCATAACCCACTGGAGCCGACACCATGCCCTGATGCCTACTGTAATCTGGTCATACTGGCTGTGGAGAACCGGgATGCAGCGGAGGAGTACTGTGCTCTGATCTGTCAGATGTTCCAGATTATCTATGGACACCAGACTATAGAGTGTGTAGACAGGTCTGGATTCCACTACACCATGCCAGATCGCTACTGGCTCCAGAGGAGTGACAGCTGTCTGACTGACATGACCTACAGCTACGACGCTGACTTCAGCCTCTGCAGCTCTtaTGATGGATCCCAGGAGGCCTTTGACCTGTACTACAGTGAGAGCTACAGTGAGAGCTCGTCTCTGTCCCTACAGGGCTCACATCACAGCCTGGCATCGCTGCATAGTGACGGAGGAGACCAGGGTCTGCAGCTCATGCAGGAGTACATGATCACCCTAAGGAGTAAGCTGAGTCCCCAGGAGCTCCAGCAGTTTGCCCTGCTGTTGAGAGAGTACAGGTTGGGATGTCCCATAGccgtgttctgttctgacctgctACAGCTGTATGGAGATAACAGGAAGTTCCTGCTACTGGGCATGCGTCCCTTCATCCCAGACAAGGACGTGGGCGTTTTCGAGAGCTTCCTAGAAGGAATCGGGATCCGGGAGGGGGGCATTCTGACGGACAGCTTCGGCCGGATCAAACGGAGCATGAGCAGTACTGCGGCAACGGTCGTGAGGGGTTACGACAGCAGGTCACTCCCCTCGGGCTCGCAGGACTTCAACCGCAGGATCAGTGACATCACACACGACATCGAGGCCCTGGGATTTCAACATGAACATGGGGGGTGGCAGGGAGAGCAGGGGGAGTGGCAGGGAGAGCAGGGGGGGTGTCAGggagatatagaggaggaggattATTATTTGTGAAGGAGTGGTGGAACAGAAATGTAGTATTTTTGCCATATGTTTGTTCACAACATCATGACCAACACACTcatgcaaacacacaccacacaagaGACTGAGATTAGCacagggacagccacagggacagccacagggacagagtcagccacagggacagccacggggacagagtcagccacagggacagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609850 lncRNA downstream 12812 74323018 ~ 74326443 (-) True G1409177
TU1609848 lncRNA downstream 25297 74313675 ~ 74313958 (-) True G1409176
TU1609845 lncRNA downstream 27964 74309152 ~ 74311291 (-) True G1409173
TU1609843 lncRNA downstream 30901 74307711 ~ 74308354 (-) True G1409172
TU1609831 lncRNA downstream 38864 74299542 ~ 74300391 (-) True G1409166
TU1609910 lncRNA upstream 65264 74439335 ~ 74439623 (-) True G1409228
TU1609912 lncRNA upstream 70561 74444632 ~ 74444855 (-) True G1409230
TU1609914 lncRNA upstream 73933 74448004 ~ 74448233 (-) True G1409232
TU1609915 lncRNA upstream 74185 74448256 ~ 74448499 (-) True G1409233
TU1609944 lncRNA upstream 138111 74512182 ~ 74512475 (-) True G1409255
XM_036947799.1 mRNA downstream 8146 74217320 ~ 74331109 (-) True LOC110510377
XR_005036627.1 mRNA downstream 121989 74214528 ~ 74217266 (-) True LOC118939594
XR_005036626.1 mRNA downstream 141475 74183180 ~ 74197780 (-) True LOC118939593
XM_036947798.1 mRNA downstream 156616 74172959 ~ 74182639 (-) False rps21
XM_036947797.1 mRNA downstream 183357 73879188 ~ 74155898 (-) True lama5
XM_036947800.1 mRNA upstream 13869 74387940 ~ 74450972 (-) True LOC110518683
XM_036945804.1 mRNA upstream 283727 74657798 ~ 74757404 (-) True LOC110512152
XM_036945805.1 mRNA upstream 526416 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 550692 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 550692 74924763 ~ 74983786 (-) False LOC110492703
TU1609691 other downstream 143304 74195525 ~ 74195951 (-) True G1409044
TU1609671 other downstream 156675 74172873 ~ 74182580 (-) True rps21
TU1609395 other downstream 561898 73770150 ~ 73777357 (-) False ppdpfb
TU1610173 other upstream 362362 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 362362 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 362362 74736433 ~ 74739189 (-) False G1409407
TU1610200 other upstream 362362 74736433 ~ 74739189 (-) False G1409407
TU1610207 other upstream 362362 74736433 ~ 74739189 (-) False G1409407

Expression Profile