RNA id: XM_036945804.1


Basic Information

Item Value
RNA id XM_036945804.1
length 4768
RNA type mRNA
GC content 0.57
exon number 17
gene id LOC110512152
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74657798 ~ 74757404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaagtAACACCGTAGTGAATACATGACCCGTGTTCCACTATTAGTTCCACTAGTCTATTACAGCCCGCAGCCGTAGAGCCGCTTCACCACTGTCGCGCCGCAGATACACTCTCTTTTCAAATCTTACCAGCAACATTCATTATCTATTTGCCTGCGCAGTGCAATGGATTTTTAACCGGGGTTTCTACCTATCTAATATCATAGAGCAGCAGAGCCTGCAGTGACCGGTCAGGCAGCGGTACACCAAGGTACCAATCAATACGACTGGAGACTTCAGAGAAAGGATATATATATAGCTGCCTATAGCTGCTACGAGGAAAAACGTCGCGGAGAAGGAGGCTGGAATTATGAAGGTTTGCCACCATGTCTAAGGCCACAGCGAACAAGCTGCACTGGCGTTCCAAGGTGCAGGAGAGTTTTGTTCCCCTGGGAGACGGGTCTGGAGAGCTGGGTGTAGCCATCGGGGGCGGGGCTGACTACGGAGAGTTCCCTTTCGTCACCGCAGCACCGGGAGGCGGGACCACGGTGGGTGATGTCATACTGGAGATCGGGGGTACGCCCGTCCTGGGCATGACGCTAGGAGACGTGAGAGGGGTCCTCAACTCATGCCCCCATCCCATACGGATTAAAACTGTCTCTCCAGGCTCTACTCTGTGTAAGGACCTGAGGCTGTACCTGAGCAAGTGTTTCACTCCAGGATCCATGGACAGCCAACTACAGCAGGTGATCAGGGAGAATTTGTACCTCAGAGCCGTCCCCTGTACGACCAGGCCGCCTCGCCACGAGGAGATATCAGGAGTGGACTACAATTTTGTCTCCATAGAAGAGTTCTTTTCCCTGGATGAGTCTGGAGCCCTATTGGAGAGTGGCAAGTTCAAAGGTAACTACTACGGGACACCCCGCCCAGTCCACATTGGCCCAGACAGCCCACCAATCACGTACCAGGAACACCGGAACGTGCTCCGGAACTTCAGGACGCGCAGCAAGTCGCTTAGCAACCTGGAGAAGgctgtggaggagggagagaacagtgagGAAGACTCTGGTCTGTCAGCGGGGTCAGTAGGTGCCAGCAGTGCCCCGCCCACAGCCAAATATCTTAGCCAATCGTGGGAAGGCAGGGATGGCGTCGGAGAGGAGAACGGAGGGAGCGGCATCGCCACACGAGGCGGAGTGACACTACCAGAGAACTGGGAGCTGGCCTTCAGTAACTCAGGAGAGGCTTACTACATAGATCACATCTCTAAGACAACCAGCTGGCTGGACCCCAGAGATCAGAGCAGGGAGATCCTCAGCGAGACAGACATACCTGTTTTCACGGACCAGCCAGCAGAGCTGAAGGGTTACTCCATCCACACCCGTttgtctaaagggctgcaggGTTTCGGCTTCAACATAGTAGGAGGAAGCAGGCAGAGGGAGTTTCTCCAGGTCTACAGCGTTACACCAGGAGGACCACCCGCTCTCAACACAGcTGATATCCTGGTCTACATCAATGACAGCTGTGTCCTGGGTCTGTCTCATAAAGAGGTGGTAGATATGTTGAAGTCTGTCCCTATGGGTCACAGTGTGGACGTTGTGTTACGGAGAGGCTATCCCATGCTCTACAACCCAGACGGCTGTCCCAAACAACCCctgacctcctccccctcctcctctcctcgggAAGCCCTCAGCGCTGCAGCCACTCCTCCCTCCACAGCCACTGCCCAGTCCCTTTCCTGTCCCAGCCCTGCTGAGCCCCCCCACACCCACCCCCCTGGCCTGGCTAACCTCAATCGGACCCTGTCTCATCACAACGGCAACTATCTCAGAGTGGCGGGAAACTCTGGATCAGGGCTGGACGCTAACGGAAACGCGGCACCACCCTCCTACCCGCTGTCTAACGGTGTCCCGGGCTCTTCTGCCAGCTCAGCCTGTGCCCCTTCCTCCTCTCACAGTAGGggcatcccccctcctccccctcctgaaTCAACCTCAGCGTCCACCAGCCAGAGTGACTCAGAGGCCTTGGGTGGATGGACACAAAGaTGGCCTCTGATGCGCTACAATGGTAactccctccccacctcctcctccatggtcCACCATCGGAGTGacctctccacctccaccctgCCCATCTCCCTGTCCAAGCTGCCCCTGTCCCAGCCGGAGGTGGGCACCGCCACCACTCCTGGTGCCCCCTGCCAGCGGCCTCCCGTGCCCCAGACGTCCCTCATGGCCGGCCCGCCTACGGAGGTCCCCCATTGCGGCTTCAACGGCTGCCCCGCCAGCGCCCACCCCCGGGTGAGCCACAGCCCGACCGGCGAGGGTGTACCCGTAGGGTCTGGAGGAGGGGAGCTGCTCCCTGTGCCCCTGGGGAGGAGTGAGGGGGGCGGGATGGGGTTCAGTGTGACGGCGGGGGGGAAGGGGGGGCAGCTGGCCCTGGTGAAGAGAGTCTGGGACAGAAGGCAGTGCTCCTCCCTGCAGACAGGGGATGCTATAGTGAAGATCGATGGAGCTGACGTGCAGAGTCTCAGCTTCGCTCAGATGCAGAGGGTCCTTCAGGAGCACATCAAGCAGGGAGAAGTAATGCTGTTGGTTTACAGAGGAGggtccttcctctctcctgtctcccctaaCCTCTACAAACCCTTCCCCTCTCCGCTTGGCCCCTCTTCTCACGGCCTCCCATCCCCATCCGACTTGCCTTCCACCTCCACCTCAGATGCCTTGGTGCCCCTGCACCTCCCCCCCAGCCACAGTGGCCTCGCCCCAGCCTCACCCTCCACTGAACTCCCCTCCTTGGTCCAGAGTACCTCCTTCCTGGACTCAGTCCCGGTAACCATCACCCTGGAGCCCAGGGACTGGctagggatggaggagggtggtGACCCTGGGCCTCCAGCCATGCCCCCTGGAGGTGGGGGAAGAGGGAGGTTGGGGCTGGGGGCCATGGTGGACGGTAGAGGGGGAAGGGCCCAGGTGTCAGTCATGGGTCAGGAAGTGGAGCTACGGAGACGGCCAGGGGAGGGGTTTGGCTTTGTCATCGCCTCACAGGACCTCGCCAATGGGGCCTCGCCCATGCTGTCCCATAGGTTTGTGACTGTGCGTCGGGGCAGCCCTGCGGCCCGGTCAGGTCAGATCCAGCCGGGTGACCAGCTAGAGGCAGTGGAGGGGCGGTCCGTTGTCACCCTGCCTCACAGAGACCTGGCACAGATACTGAGACGTGCCGGAAACACACTCAGGCTCACCATCATACCAAGACTTAACACCAACTCCTCTAATCTGTCAGAAGGCCCAGAGTTAGAGGCTGACGGCAGGACAAGGAAAAGCCACAGACGGAGGCCCAAGGTGAGGCTTCAGCAGGACCAGCGTTACTATAGTGCAGACCTAGAGAGAGGTCCTACAGGTTTTGGCTTCAGTCTGCGGGGGGGCAGTGAGTACAACATGGGCCTGTATGTCCtgggactgatggagggaggaccTGCCTCGCGCAGCCACAAGATACAGGTGAGTGACCAGCTGGTGGAGATAAATGGTGACAGTACAACAGGAATGACCCACAGCCAGGCCGTAGAGCAGATAAGAAGAGGAGGACATCGTATACACCTGGTACTGAAGAAAGGAAACGGATACGTCCCAGACTATgaccatgatcCCAGAtcagtctccttctctctctacccagaGGATGCGGGTGTGGCTGCAGTAGATAAGACGCGCTCCCTGCCAAGGAAGAGTGAAAGGctggatagaggaggaggggagaggcagaGTAAAAGAGGTAGTCTGGGGGgaatgaggagaagaggaggaggtactCCTGACACAGACCTGGATTGGCCCGAGGAGGAGGGTCAGGTGGTCAGTCACAGAGGTGAGAGTTTAGGGGATAAGGACAACGGGAAACGCACCCAGAGTTTACCCAAGAACAGAcaggaagtagaggaggaggaggtgaggcccAGCGAGTCCAAACAGAGGTCAAAACAGCAGAGGAGCAGGGAAATGCAGAGTAAGGGGAAGAAGAACAGGAGAGATAGGGGAGATGAGACAGAGGAGCTTCCCATCAGAAACACAGGTGAAGgtaagagggaagagaggaggagggagagagagagggagacggaggtaGAGGATTCCAGACCTGCAGAGAGAGTTCCCTTCTCCTTCCCCAAGCCGCTGCAGGATGGAGAGGCTGAGCTGTCTAATGCAGAGTCAGGGGCAACAAGCACCTCCGGAGACAGCTTCTCTGACCAGGTCAGCATGTCTGCAGCTAGCATCTTCGGTTCCACCGCCCAAGACCccagagaccagagaggagaCCCCTGGAGCACCCAGTCATGGCTCCGGGCCAACCATGCATCCCACACCCCAGGCCCCTGGAGCAGCACACAGCCACAGAGGGCCACCTACAACAGTCCCTGGATTAAACCTGACCTGCAGACGTCTCAGGTTTTGGTGGGACACAGACTGACAGGAAACAGGCTGAGAGGTCTTGACCTGTAGATGATAGATAATCCTGTTTAGAGGTTTCCTGGATTATTTACTCGTAATTCCAGAATTtgtccaaccaggatttctagaaaacctgggaatttaCCTCCTGTCTGGGACACTTCCctgaccactgcaccacccaatGACCTGTTATCCCACCTCTTGACCAGGACACATCATCATACCCATGATTCTACCTACCTAACACCATTGCCTATAGAGGTCCACTATCATATTGGAGCTATATCATAATGAGTGGTATTATCTTCAACATAATCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609994 lncRNA downstream 21493 74636046 ~ 74636305 (-) True G1409295
TU1609992 lncRNA downstream 56589 74600711 ~ 74601209 (-) True G1409293
TU1609983 lncRNA downstream 61687 74592217 ~ 74596111 (-) True G1409287
TU1609975 lncRNA downstream 62809 74562923 ~ 74594989 (-) True G1409279
TU1609965 lncRNA downstream 73654 74582438 ~ 74584144 (-) True G1409273
TU1610242 lncRNA upstream 3547 74760951 ~ 74761346 (-) True G1409419
TU1610243 lncRNA upstream 5206 74762610 ~ 74770849 (-) False G1409420
TU1610244 lncRNA upstream 8985 74766389 ~ 74770849 (-) True G1409420
TU1610245 lncRNA upstream 10718 74768122 ~ 74770138 (-) True G1409421
TU1610247 lncRNA upstream 20103 74777507 ~ 74778567 (-) False G1409423
XM_036947800.1 mRNA downstream 206826 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 283727 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 326689 74217320 ~ 74331109 (-) True LOC110510377
XR_005036627.1 mRNA downstream 440532 74214528 ~ 74217266 (-) True LOC118939594
XR_005036626.1 mRNA downstream 460018 74183180 ~ 74197780 (-) True LOC118939593
XM_036945805.1 mRNA upstream 143083 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 167359 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 167359 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA upstream 167359 74924763 ~ 74983786 (-) False LOC110492703
XM_036947803.1 mRNA upstream 167359 74924763 ~ 74984835 (-) False LOC110492703
TU1609691 other downstream 461847 74195525 ~ 74195951 (-) True G1409044
TU1609671 other downstream 475218 74172873 ~ 74182580 (-) True rps21
TU1609395 other downstream 880441 73770150 ~ 73777357 (-) False ppdpfb
TU1610267 other upstream 87700 74845104 ~ 74847937 (-) False G1409430
TU1610270 other upstream 87700 74845104 ~ 74847937 (-) False G1409430
TU1610805 other upstream 611486 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 677650 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 998374 75755778 ~ 75756479 (-) True G1410190

Expression Profile