RNA id: XM_036945805.1


Basic Information

Item Value
RNA id XM_036945805.1
length 1848
RNA type mRNA
GC content 0.56
exon number 5
gene id LOC118939467
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74900487 ~ 74905798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGGGTTCTACAGAGCAACAGTCTCGCTGGATGTCCCTTCCAGCCTTGCTCCCTCCTGAAGCCATGTTTAACTTTACTACAGAGATCACCTCTCTAGACTCTGTCCAGTACCACAGGGCTACGGCCAGTCCAGACTCGCTCCAGCACCACAGGGCTACGGACATTCCAGACTCGCTCCAGTATCACTGGGCTAAGGCCAGTCCAGACTCGCTTCAGTATCACTGGGCTACGGCCAGTCCAGACTCTCTCCAGTACCACAGGGCTACGGCCATTCCAGACTCGCTCCAGTATCACAGGGCAAAGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGGCCAGTACAGACTCTGCTAAGGCCAGTCCAGACTCTGCTAAGGCCAGTCCAGACTCTGTTCAATACCACAAGGCTACGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGACCAGTCTAGACTCTGCTAAGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGGTCAGTCCAGACTCTGCTAAGGCCAGTCCAGACTCTGTTCAGTACCGCTGGGCTACTGCCAGTCCAGACTTTGCTAAGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGGCCAGTCCAAACTCTGCTAAGGCCAGTCCAGACTCTGTTCAGTTCCACTGGGCTATGGCCAGTCCAGACTCGCTCCAGTATCACTGGGCTAAGGCCAGTCCAGACTCTGTCCAGTACCACAGGGCTAGGGCCAGTCTAGCCACAGACTTCCTGCACCAGCCGTACCACTCAGCTGAGTCTGACTTGGCCAGCCTGCCTTCCTGCATCTCCAGCAGCAGCCATAGTCGGTCTGCACCATCGTACGGACACAGCCCAGTTCACCAGGTGTACTCTTCATCCTCCCACGTCAACGGTAGTGTCCAGTGGTTGGAGCAAGGGGGTTCTGGAGGTCAGTCTCTcagctgctcctcttcctcctggtaCAACAGCCctttctccaccaccaccaccacctcctccttctcctccacaaACTCAATCTCGTCTCTGACCAACCCCAGGGCCGAGCACTACTCCCGAGGGCACGGCTGTCAGGAAATCCAGAGGCTTCAGGAGGCCTTGAAGGGGGAGAGGCTGAGTCCCAGTGAGGACGGAGGTAGCAGTAGTTTCCTGACTCTGAACCCTGCACAAGGGGATGGGTACCCGCACTCTGCCCAGGCCTACGGTCACCCCTTGGGCTTCTACAGCAACTCCTGGGTGTCAGGTCAGGACTACAGCCCCGCCTCTCTTTGCTCCTCCCCTGGTGCTGGCATGTATCCCTCCTACTGCTACTCCCCCAAACTACAAAACAAAATCAACCTCTCCCCTCCAGATGCCCGTGAGTGTGTGAACTGTGGTGGGACCGCCACCCCTCTGTGGCGTCGTGATGGGACAGGACACTACCTCTGTAACGCCTGTGACCACAAGATGAACAGCCAGAACAGACCTCTCACCAGACCCAAGAAGAGGCTGATGGTCAGTAAGAGTGCAGGGACCCATTGCTCCAACTGTCAGACTAGCACCACCACGCTGTGGAGACGTAATGTCAGTGGAAAGACAGTCTGTAACGCATGTGGACTCTACTACAAACTACACAACATCAACAGACCTCTGACCATGAAGAAGGAAGGTACTCAGACACGGAAACGTAAGGCCTCCATTATGAACAACAGGGCCAAGTAGAAGACAGGTGTGTTAGAGGCTGGGTCTCTACTCTGACCTCTCCCTGTCCAGACTCCAGTCTTCTGACATGCCCGACCACACACACTGAGGACTACTACACACACTGAGGACTACTACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610311 lncRNA downstream 3504 74896503 ~ 74896983 (-) True G1409469
TU1610299 lncRNA downstream 12457 74887810 ~ 74888030 (-) True G1409457
TU1610292 lncRNA downstream 21792 74878077 ~ 74878695 (-) True G1409450
TU1610263 lncRNA downstream 52550 74845104 ~ 74847937 (-) False G1409430
TU1610264 lncRNA downstream 52550 74845104 ~ 74847937 (-) False G1409430
TU1610694 lncRNA upstream 16270 74922068 ~ 74924229 (-) False LOC110492703
TU1610695 lncRNA upstream 16270 74922068 ~ 74924229 (-) False LOC110492703
TU1610698 lncRNA upstream 16270 74922068 ~ 74924229 (-) False LOC110492703
TU1610703 lncRNA upstream 18880 74924678 ~ 74928014 (-) True LOC110492703
TU1610713 lncRNA upstream 65526 74971324 ~ 74973934 (-) True G1409768
XM_036945804.1 mRNA downstream 143083 74657798 ~ 74757404 (-) True LOC110512152
XM_036947800.1 mRNA downstream 449515 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 526416 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 569378 74217320 ~ 74331109 (-) True LOC110510377
XR_005036627.1 mRNA downstream 683221 74214528 ~ 74217266 (-) True LOC118939594
XM_036947804.1 mRNA upstream 18965 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 18965 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA upstream 18965 74924763 ~ 74983786 (-) False LOC110492703
XM_036947803.1 mRNA upstream 18965 74924763 ~ 74984835 (-) False LOC110492703
XM_036947807.1 mRNA upstream 80827 74986625 ~ 75015379 (-) False irak1
TU1610267 other downstream 52550 74845104 ~ 74847937 (-) False G1409430
TU1610270 other downstream 52550 74845104 ~ 74847937 (-) False G1409430
TU1610173 other downstream 161298 74736433 ~ 74739189 (-) False G1409407
TU1610178 other downstream 161298 74736433 ~ 74739189 (-) False G1409407
TU1610196 other downstream 161298 74736433 ~ 74739189 (-) False G1409407
TU1610805 other upstream 463092 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 529256 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 849980 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 958031 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 1034909 75940707 ~ 75941802 (-) False G1410288

Expression Profile