RNA id: XM_036947806.1


Basic Information

Item Value
RNA id XM_036947806.1
length 5849
RNA type mRNA
GC content 0.59
exon number 29
gene id LOC110492703
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74922068 ~ 74984835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTTTGGGTGGTTAGTTTGCGCCAAGATGGCGGCACCCATTGAATCGCACCGTTTTGCTTATGTGGAACTATTAACTGCAAAACACACCAAACAAAATTTATTGTGTGAATTTTGAAGAGATGCACAAAGTTGACTGCGAGTAAcaccattttattttacattattttttGTATAAATGGCTGTGCATTCATGGTGTTACGGATTTATGTTGTTTTGACCTGCCGGCTTTTTTTTCTACAAATTTTCTGCAAAGCGTCGAGCAAGAGGAACTTCATCTCCCGGCACAATGGCATCTGGCTCAGTCCTGCAGCCACGGTGGAAGCGGGTTTTGGGTTGGTCCGGTCCTGTCCCCCGGCCCCGACATGGGCACCGTGCGGTTGCAATCAAAGAATTGATGGTCGTTTTCGGGGGGGGCAATGAAGGAATTGTGGATGAGTTGCACGTTTATAACACAGCGACCAACCAGTGGTTCATTCCTGCTGTCCGTGGTGATATCCCGCCTGGCTGTGCTGCGTATGGGTTTGTGTGCGACGGCACCAGGCTGCTGGTGTTCGGAGGGATGGTGGAGTATGGCAAATACAGCAACGATCTGTATGAACTGCAGGCTAGCCGCTGGGAGTGGAAGCGTCTGAAGGCCAAATCTCCTAAGAACGGCCCTCCTCCCTGTCCCCGTCTGGGCCACAGCTTCTCCCTGGTAGGGAACAAATGCTACCTTTTCGGAGGACTGGCTAACGACAGCGAGGACCCCAAGAACAACATCCCCAGATACCTGAACGATCTGTATACGTTGGAGCTGCGTGCCGGCTCCAGTGTGGTGGGCTGGGACATCCCCATCACCTACGGGGTGTTGCCCCCGCCCAGAGAGAGCCACACTGCCGTCGTCTACACAGAGAAGTCCCGTCTGGTCATCTATGGAGGCATGAGTGGTTGTCGTCTGGGGGATCTGTGGATCTTAGACATAGACACCCTCACATGGAATAAGCCCTCGATCAATGGAACAGCTCCTCTCCCTCGCAGTCTCCACTCTGCCACAACTATCACCAACAAGATGTACGTGTTCGGAGGCTGGGTTCCCCTGGTGATGGATGACGTCAAAGTAGCGACACACGAGAAGGAGTGGAAGTGCACCaacacactggcctgtctcaacctagACTCGATGGTGTGGGAGTCAGTTCTACTGGACTCTCTAGAGGATAATATCCCCAGGGCCCGAGCTGGTCACTGCTCCGTAGCCATCAACTCACGTCTGTACGTCTGGAGCGGACGGGACGGATACCGCAAGGCCTGGAACAACCAGGTGTGCTGTAAGGACCTCTGGTACCTGGAGACAGAGAAGCCCCGCCCCCCGTCACGGGTGCAGCTGGTGAGAGCCAACACCAGTAGCCTGGAGGTGAGCTGGGGGGCGGTACCTACTGCAGACACCTACCTGTTACAGCTGCAGAAGTACGATATCCCCCCCGCCCCGGCCGCTACCACGCCCGGCGTCAGCCCCGCGACGCCACTGCCGGTCAATTCCTCCCCCAAAAGCCCCGTCTCAGCCTCGGCAGTGTCCGCCCAGGGCCACCCTCTCCAGGGCATCACCCTGGTCCCCTCCATGCCTGGGAGTCCAGTTCCTGCTCGCGGACCAGCTATTCTTAAGGTGTCTGCTCCCCAATCCACCACAGGCGCCTCCATCGTCACGGTGAGACAGGCCAACCAGGGCGGGAAATCCCCTGTCATGGTTACAACACTTCCTGCTGGGGTCCGAATGGTGGTGCCGGCCCAGGTCGCACAGGGAACcCCAATGGGCAGCAGCCCTCAGATGAGTGGCATGGCTGCGTTGGCTGCAGCAGCTGCGGCCACCCAGAAGATCCCGCCCTCCACGGCCACCATGCAGTTGCCAGCCGGTGCCACCATAGTCAAGACAGTAGCCATGAGCCCTGGCGCACAGACTGTCAAAGTAGCTTCGCCTGTTATGATCAGTAACCCAGCTACTCGCATGCTGAAGACTGCTGCGGCTCAGGTGGGCACGTCAGGTGTCGCCACACCCGGAACGCCCAATCGGCCAATCATCACCGTGCACAAGTCTGGCACGGTGACGGTTGCCCAGCAACACCAGGTGGTTACCACGGTAGTGGGAGGAGTCACCAAGACCATCACTCTGGTTAAGAGTCCCCTCACTCTGGGGGGAGGTGGCACGCTGCTGACCGCGGCCAACCAGGGTCAAAACAAAGTGATGTCTGGGAAGGACGTGCAGCATTGGCTGTCTAACCTGTCCAACCTGGGGAAGGTGATGTCCGTGGTCCAGACCAAGCCTGGTCAGACAGGAGCGGTGACGGGACAGGCTGGCTCCAGCCTCCAGCACATCCTACAGACGAAGGGTCCTCTTCCGGCGGGTACTATCCTGAAGTTGGTGACGTCAGCCGACGGCACgcccaccaccatcatcaccacttcCAAGGCCGGGGCCACCGTAGGGGGCAAGCCCACCATCTTGTCCTACAGCAGCATGCCTACCTCCACCTCCAAGCCGGGCACCCACATTATCAAGACCATACCCATGTCCTCCATCGGACAAGCAGGAGTGACAGGAAGTGGTATGAAGTCCCCCATTACCATCATTACCACTAAGATGATGACACCAGGCACCGGGACACCAGGCAAGATCATCAGCGCAATGCCCAGAACTGGGACTGGTCAACAGGGACTCACACAGGTGGTGCTGAAGGGTGCCCCAGGACAGCCCGGAACTATTTTACGGACCGTCCCCATGGGAGGTGTACGTCTCGTCTCCCCGGTAACGGTTTCCGGTGTCAAGCCTAACGTCACCACCCTGGTCGTCAAGGGAACCACAGGTGTGACTACGTTGGGTACGGTGACTGGCACAGTGTCGACCAGCCTGGCAGGAGGAAGTGTTGCCACCGTTGCTCCTATCACCACCTTGGGCACCATGACGACCCTGCCAGGACAGGTCACCGTCTCCGCAGCACAGGCAGGAGGCCAGGCAGGAGGCCAGGCCACCCAGGTGACCTTAATCACTTCCCCTAGCGGTGTGGAGGCTCAGCCTGTCCATGACCTTCCTGTCTCCATCCTGTCGTCCCCCACCTCCGCCGACCCCTCCTCCACCCAGCCCGAGGCAGGCGACCCAGGCACCGTGACCCTGGTCTGCTCAAACCCCCCCTGCGAGACCCACGAGACCGGCACTACCAATACAGCTACCACGGCCTCCGCTAACATGACTGGTAATGGtggggtggagagggtgtgttCAAACCCGCCGTGCGAAACCCACGAGACCGGCACCACCAACACTCAAACGACAGCGTCCTCCAACATGGGCCAGGTACAGCAGGTGTGCACCAACCCACCGTCAGAGACCCACGATACAGGTACCACCAACACCCAGACCACCGCCAGCTGTAACATGGGATCCAACCAGCAACAACAAGGCTCCTGCGTAACCAACAACACCAGCGGGTCTGATCCCCCGTCCTCTccgcccccctcctcctcctccggagACCTCTCCCCCTCGTCTGTTTCTGGTACCAGCTCTGTGCCCGGGGTGCTACGACCGGAGACTCTGAGAACAGGGACCACCTACACCTCGACCACCGCACGCTCTAACATGGGCTCTGACAAGATGGGCATGACGCTCAGCTCCTCGTCCTCAGATAACCAGAGCAAGTCATCCagcggtggaggaggaggaggagtaggatccCCCCTCACATCTCCTGTCTGCTCCAATCCACCTTGTGAAACACACGAGACTGGAACTACCACTACCTCGACGCAGGACAACTCCAGTATGGGCATCGGGCAGACTACAGGGACAGTGCAAAATGTGTGTTCCAATCCTCCGTGTGAAACACATGAAACAGGGACGACCAACACCCCGTCTCAGACTACGTCCAACCTGACAGGAACGGGGACAGGAACGGGGACAGGGACGGGCACGGTCCAGAGAGTGTGTTCCAATCCACCGTGTGAAACACACGAAACGGGCACCACCAACACAGCTACCACAGcccAGCCTGGTGACTCGACACAAGGAGACAACGGAACTCAAGAGGCTCCCTCGTCATCCTCGGCAACCACCGAGTCCAGCGCATCGACGACATCTGGCAGAGCCGTCACCACGGTTACTCAGTCCACGCCCACACCTGGGCCCTGCGTTCCCGAGATCTCATCAATGTCTGGGTCGTCTGAGGCGGTGGCATCGAGGgctgaagaggaagaggaggccatGCAGACCGACTCTCTCCCAGAGGGCACAGTGAGGGTTGTGACCCTGGAAGAGGCTGCTGCGGCTGGGATACATGTCCATGTGGAGGACATGGAGGAACAGAACCAGGGGGAGCAGGAGGGCCTGCCTGCGGAGCTGATGTCTGAAGGTGGCTCGGGGGGCCAGCAGACCCTGATGGTGACGGGTTTAACCCCCGAGGAGCTGGCTGTTACCGCTGCAGCCGAGCAGGCAGCACAACACGCTGCTACTGAGGAGGCCCAGGCCAAGGCCATACAGGCTGTCCTGCAGGCCGCACAGCACGCTGTCATGAATGAAGGAGACGGTggccatcacaccaccaccatccccaTTGTGTTGACTCAGGCTGAGCTGGCAGCCCTGgtacaacaacagcagcagctgcAGGAGGCCCAGGCTCTTGCTCAGGCCCAGGCTCTTGCTCAGGCCCAGGCTCTTGCTCAGGCCCAGGCTCTTGCTCAGGCCCAGGCAGCAGCAGCACAACACAACCAGCCCACCGAGGGCCTGGCCCCAGCAGACAGCCTGAACGACCCAGCGTCAGAGAGTAACGCCGATGAGCTGGCCGCTGCAGTGACCCAGGCTGTGGCCCGATTAGCTCCGTCCTGCACCTTAACCCCCACTCAGACAATGATGGTGACCAGCCCGGCTAAGATACAGGCGGCTACAACCATGGCAGAGGTGGTCAATGGAATAGAGTCTGCCGCTGGGAGGCCAGCGCCGCCTCCTCCTGCGGTGGCCAAAGCCCCGCTGAAGAAAGACAACCAGTGGTTTGACGTTGGCATCGTCAAGGTGACCAACACGGTGGTCACGCACTACTACCTGCCCGACGAAGACGCGGCCGCCGTTGACGATGACTCTGGGACGATCCCGGACTACAGTCAGATGAGGAAGATCGATCTCCAGCCAGGGACGGCCTATAAATTCAGAGTGGCCGGGATCAACACCTGTGGCCGGGGGAACTTCTCAGAGGTCTCGGCCTTCAAGACGTGTCTACCAGGCTTCCCCGGCGCTCCCTGTGCTATCAAGATCAGCAAgaGCCCAGACGGCGCCCACCTGACCTGGGAGCCTCCGTCGGTCACATCTGGTAAGATCATTGAGTACTCGGTGTACCTGGCCATCCAGAGCGCCCAGAGCGGGGAGCAGGCCaagcccaccaccaccaccaccccagcccAGCTGGCTTTCATGCGGGTGTTCTGTGGGCCCAACCCTTCCTGCCTGGTGCAGTCGTCCAGCCTCTCCAACGCGCACATAGACTACACCACGAAGCCTGCCATCATCTTCCGTATCGCAGCCCGCAACGAGAAAGGTTACGGCCCTGCCACGCAGGTCAGGTGGCTCCAAGAGATTAGTAAAGATGGCCTTGCAGGTAAACCTACCGTCAAGAGACCAGGTTCCTCACCTGACATGAAACCTGCTGGTCCGAAGAAGGCCAGATCAGACCAGTGAGGGGGATGACTATGACTGAATACAATACCTTCCTACTGATTACAATACCGCAGGCTCCACCTAGACCCCGGACTCCAACCTCTACCAGAACCCCATCTAACCCTACAACAGCACATCCTGAACCCAGACCAGGCCCCCAATCCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610694 lncRNA downstream 534 74922068 ~ 74924229 (-) False LOC110492703
TU1610695 lncRNA downstream 534 74922068 ~ 74924229 (-) False LOC110492703
TU1610698 lncRNA downstream 534 74922068 ~ 74924229 (-) False LOC110492703
TU1610673 lncRNA downstream 20792 74903746 ~ 74903971 (-) True G1409742
TU1610672 lncRNA downstream 21295 74903139 ~ 74903468 (-) True LOC118939467
TU1610717 lncRNA upstream 11060 74994846 ~ 74995261 (-) False G1409772
TU1610718 lncRNA upstream 11060 74994846 ~ 74995261 (-) True G1409772
TU1610684 lncRNA upstream 33827 75017613 ~ 75024741 (-) True G1409752
TU1610742 lncRNA upstream 78402 75062188 ~ 75062682 (-) False G1409794
TU1610743 lncRNA upstream 78402 75062188 ~ 75062682 (-) True G1409794
XM_036945805.1 mRNA downstream 18965 74900487 ~ 74905798 (-) False LOC118939467
XM_036945804.1 mRNA downstream 167359 74657798 ~ 74757404 (-) True LOC110512152
XM_036947800.1 mRNA downstream 473791 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 550692 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 593654 74217320 ~ 74331109 (-) True LOC110510377
XM_036947807.1 mRNA upstream 2839 74986625 ~ 75015379 (-) False irak1
XM_036947808.1 mRNA upstream 2839 74986625 ~ 75015379 (-) False irak1
XM_036947809.1 mRNA upstream 2839 74986625 ~ 75015379 (-) True irak1
XM_021564530.2 mRNA upstream 45821 75029607 ~ 75046973 (-) True LOC110491183
XM_036945806.1 mRNA upstream 387834 75371620 ~ 75372905 (-) True LOC118939468
TU1610267 other downstream 76826 74845104 ~ 74847937 (-) False G1409430
TU1610270 other downstream 76826 74845104 ~ 74847937 (-) False G1409430
TU1610200 other downstream 185574 74736433 ~ 74739189 (-) False G1409407
TU1610805 other upstream 385104 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 451268 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 771992 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 880043 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 956921 75940707 ~ 75941802 (-) False G1410288

Expression Profile