RNA id: TU1610694


Basic Information

Item Value
RNA id TU1610694
length 2133
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC110492703
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74922068 ~ 74984835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCTGAACCCAGACCAGGCCCCCCCCATGCTGAACCCAGACCAGGCCCCCCCCATCCTGAACCCAGatcaggcccccccccccccatccggAACCCAGACCAGGCCCGACCACCCATCAGTCACAAAATGGCTGCAAAATAGATAAAGCTGAGAAACACCAGATCCCCTGCCCTCATCACTGGACGTTGTGGTGCCATGGACGCCTTATTTCATTCTTCTGtatttcttcttattattattattattattattattgatatttACTTGTTTAAACCATGGAAAGCACATAATTAACTTTTTTATTTTCCTATGATATGATTTTCTGTGGAATACAAACAAACTGTTCGGTCTGGTTTAACTGTTGTTGCTAGATAGTTCGCTAGTCTCTTTCATGCGTTTCCTATCCCCTGTTAAATCTACACAAGCAGTAGACAACACACATAACTGCTCATAAAATAATCTAGTGTATCTCATTattggaggaggggggggaggggtgtGGGCATCAGTAGGTTGCATTCAGAAGAATCAGACGGTTGCTATAGGAGACGGTTGGAACATAAGAAGATGACGTCATTGTCACATCGTCATAGAGATTTAATAAATACACCAAACGGACAGCAGGTCGCTATGGAGAGGACAAGTGTTCCCCATTCCAAGGGAATCCTCATCAACCAATCAATACTCTGTATCTGTCCTGGCTGTCATCTTGCTTTGTGACATCACTGTGTTTTTAATGTGTAGctatgtcagagaggagactgAGTTAAAGGATTAGCTTCAGAAAAAAAAATACCTGTGGTTCATGTAGGTTTAGGAGACTGCTTTATTCTCCCTCTAGTTGACAATCTACTCCGGTAGTTTCTCTGCTTTCATTGGAGGAGTTTGTTGACAGTGATTTGGCTGACTGCCAGGGTGACAGTGATTTGGCTGACTGCCAGGGGTGACAGTGATTTGGCTGACTGCCAGGGGTGACAGTGATTTGGCTGACTGCCAGGGGTGACAGTGATTTGGCTGACTGCCAGTGGTGACAGTGATTTGGCTGACTGCCAGGGGTGACAGTGATTTGGCTGACTGCCAGGGGTGACAGTGATTTGGCTGACTGCCAGGGGTGACACAACCCAATACGTATTTTATAACCTTATTTGACCGTTTCAGAGTTGGTGGTGTAAGGAACGATTTACATAACAAGGACTTTTTGTACTTGTTCTGCTGCAGAACATAAGATTTGTCAGAAAAAAAGAGGAGTggattgttttatttttgtttacttaattttttttattcaagAAATTAATTTGctggaaaaaaaaatatttattttttacctcaccccccctccccctttgaaTCTGTCGATATTCCGTAGTAGAATTAATTTGTTGGACTATGGAATTCAAAaggttatttttattttcccaaggcttgttttcttttcttttctttttttgagATAAACCCCAGTTTATTCCGCCCCCAAATTGTGGAGGAAGTTTTCGTATTAATAAACATTGACATTTTGTTTTTGGTGTATTATGTGTTAAGGTAACGTGACGAGTGTTTTCCACGTAGTCTTTTTGAGCGGAACGGTTTTTTAGTTACCTAGTGGATATGATGGCAGGGAGAGTGATTGATTGGCGCAGCTAGTATCGGCTCAGTTGTAAATAAAGTTCCTTCACGTAGcaagaagtaaaaaataaaaaatttgaaaaaaaatggCTTTTTATATAATTATCTGTAACAAAAATGGCTTTTATATGTTTGTCATCTCGGTTGCTTTGTCtagatataaaaaataataataagaatTAAAAAGGAAATGTCTTCCTGCTCTGTCTTGTTCTCGCTTCTGTTTTTCCTCATTGACTATAATGCAGAACCCTTCTTCTTGATATCGTTGTTATGGTTATAATGCCCAAGTTGCGTTGGCAAGCAGGGAGGTCAGGAGGTTGTATTAAgaaccaaacatagaaatagaatctagAATAGATTGTTGagtagattatatttctatggaagCAACAGCTAGCTGATGGAGATTTGAGCTTTGTTCAATCTGATCTGACAGATGTTTGGGTATTAATCTGTTTGTGAATATTACTATGGAAAATAAAACTTTTTAGTGCATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610673 lncRNA downstream 18097 74903746 ~ 74903971 (-) True G1409742
TU1610672 lncRNA downstream 18600 74903139 ~ 74903468 (-) True LOC118939467
TU1610311 lncRNA downstream 25085 74896503 ~ 74896983 (-) True G1409469
TU1610299 lncRNA downstream 34038 74887810 ~ 74888030 (-) True G1409457
TU1610292 lncRNA downstream 43373 74878077 ~ 74878695 (-) True G1409450
TU1610703 lncRNA upstream 449 74924678 ~ 74928014 (-) True LOC110492703
TU1610713 lncRNA upstream 47095 74971324 ~ 74973934 (-) True G1409768
TU1610714 lncRNA upstream 48866 74973095 ~ 74973566 (-) True G1409769
TU1610717 lncRNA upstream 70617 74994846 ~ 74995261 (-) False G1409772
TU1610718 lncRNA upstream 70617 74994846 ~ 74995261 (-) True G1409772
XM_036945805.1 mRNA downstream 16270 74900487 ~ 74905798 (-) False LOC118939467
XM_036945804.1 mRNA downstream 164664 74657798 ~ 74757404 (-) True LOC110512152
XM_036947800.1 mRNA downstream 471096 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 547997 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 590959 74217320 ~ 74331109 (-) True LOC110510377
XM_036947804.1 mRNA upstream 534 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 534 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA upstream 534 74924763 ~ 74983786 (-) False LOC110492703
XM_036947803.1 mRNA upstream 534 74924763 ~ 74984835 (-) False LOC110492703
XM_036947807.1 mRNA upstream 62396 74986625 ~ 75015379 (-) False irak1
TU1610267 other downstream 74131 74845104 ~ 74847937 (-) False G1409430
TU1610270 other downstream 74131 74845104 ~ 74847937 (-) False G1409430
TU1610200 other downstream 182879 74736433 ~ 74739189 (-) False G1409407
TU1610805 other upstream 444661 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 510825 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 831549 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 939600 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 1016478 75940707 ~ 75941802 (-) False G1410288

Expression Profile