RNA id: XM_036947809.1


Basic Information

Item Value
RNA id XM_036947809.1
length 2615
RNA type mRNA
GC content 0.50
exon number 13
gene id irak1
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74986625 ~ 75015379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTTCTGCTTGCTGGAGATGGCGAAGTTTCTAGGCATATTTAAAGCAGGGGAATAACTTATTGAATAAccgatttatatatatatatatatttatatatcagCGTGATCGTTCTTACCGTAGTGAATTTGAAACATCAGAACAAAAATGTTACAGCTAGCTTGCTAGCAAGGTTTTTAAAAGATGTCGTCCTGGGATATCGGAAAGGTCTACTTGTACAAGTTACCACCAGTTGTGCTGTGCGACTTCTCCCTTGTTATGGACAGTATCTCCGATGTGGACTGGGACAGATTCGCGTCTCATGTGTTGACTGACCAGACTGACAGGCGTCTggccgagaggagagagagacggacagactgGGTGATGAATCACTGGGCACAAAGGAATGGAACAGTAGGAGAACTACTGAACGTACTGGACAAGCTGCAGCTGTTAAGAGCTAGAGATATCATCTTGAACTGGAAGCCCAGTGGACTACGGCCCTCTTCCACTCCACTTGCTGCTCCGTCGCAGGTTAAACTGGAGCCTCTTGTtcctccatctcatctcttcAACCCACCTCCTAAAGTCCATCCTACCAACACTCTGGCCACTAAGGCGTACTCTCCACCTGGACTGAGGTCTCTGCCCAAACCTGGCCCTCCACCCTCAGGGCTGAAATCACAGGACCACAGAGGGGCGTTTGTAGACCAACAGAACTCTCCACTAGACTGGAGCGTAGTGAAGGAGAGCTTCAAGACCGAGGTGGAGAAGCTATCACAATACAGACATCCCAATATTGTAGACTTTGTGGGCTACTGTGTTGGACAAGGAACCTACTGTCTGCTCTATGTCTTCATGCCCAACGGTTCTCTGGAAGACCAGCTGCACAACCAGGCCAGTGCTGCCCTCTTCTGGCCACAGCGTGTCAGTGTGTTGCTGGGCACAGCCAGAGCCATTcagttcctccactcctcctctccgcAGCTCATACATGGAGACATCAAGAGCTCTAACATCCTACTAGACGAGCACCTGGAGCCTAAGCTGGGGGACTTTGGCCTGGCCCGGTTCTGCTGTAGCCCCAGCAGTAGGTCCGCTGGTAGAACCACCACGGTAGCCTATACCAAGACAGTGAGGGGAACACAGGCGTACTTACCTGACGAATACCTCAAAACAGGCGCGTTGGGAGTAGCCATTGACATCTTCAGCTTTGGAGTGGTGCTGCTGGAGGCTCTGACTGGTCGTAGAGCTTTAGAAGTGGACCACAGCCAATCCAAAGCTGTCTACCTGAAAGACCTGGTGAAGGAGGCTGAGGACGACGCAGGTCATCAGGTCAGAGGGAGGTCAAAGAGGACTTCAGAGAAAGTGACCCAGGAACAGTCTAGTATTCCTCCAGCCGCTACACATATCTGGCAGAAGCACCTGGACCCCAGACTGATGGTGACAGGGATGGGAGGCTCTCTTTCTAGCTCATCCAGGGTTTGTACGGCAGGTCCGGGCTCCTCTTCTCCGGCCCCACACGGCTCCCTGGATCTGACGACTCTGGCCTGTCGCTGTCTGGAGGCCCGGGGGAAGAAAAGGCCCCCCATGACCGAGGTGTTCCAGGCGCTTCAAGACATCCATACCAGTTTGAAGGCCTCAGACAAAGCcgtatcctcctcttcttctccttctcagcAGTCCTTCCCCAAACCTCCTCAATCATCCATAGACTCATGTATAGACTGCCTAACAGACGTTCTGTCAAAAGTAGGTCCACTGGAAGACACGTACCACTGCCCTCCACACCCCTACTCAATCTCGCCTCACCCGTCCTcggtcctccctccttcctcctcctcgtcctcctccttcCTTGGTCCATGTGAATCAGATGAGAGCCAAGGTTATTCCCAGTACTGTGCTCCTCCTTCTCGGCTCCCCCATAGTGACACCCGATCAGACCCCCAGACCTCCATGCCATGTGGTTGGTCTTCACCAGCCAGACAGTTACGCTCCAGGTCCCCGTGCTCAGCGTCAGgctTGCCCTGCCATGGACTAGTTGTAAATACGTGCGAAGAGCGTTTCCTTCACAAGATGGCGCTCTGTGACGAAGGCAGAATACAGACCGGCCAGCTTTTTTTCCTCAGATATTTATTTATGCTGAGATGAACCCACAATGCCGAGGACCAGAAGAGAGTGATGAGCTTGATTATCTTTCCAGTGAGGCCAGTGAGAGTCAAGCCAACACACCCAGACAGACCAACGCTCACAACTAACAACCCAGCCTACCATTACACACTGCAGTACCTAAACAAACTAAGCCATGTGGGTGCGATCTGCGTCTCATACATTGGCCAACAGTCAATATTGGCTGTTATGCAAGTTCAGTTTGGGAAATGCAAAGCAAATGTTGacttgacaaaaaaaaagcaGGATTGGAGTATGttccatttttattttaaaaaactgAAGCATTGCGGTTTTGATATCGTGAAATGTAATCAAATCCAATCATTTCTTTCACACATCACTAGTTATGGTTACAATTTGTACAATGTATCTTTTAGATAATTCAGACAACTGTATGATTTGTATTTGTACAATATGAATGTCAAGGTTTTCATTAAATaaacttgaactggactgac

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K04730 IRAK1; interleukin-1 receptor-associated kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610713 lncRNA downstream 12691 74971324 ~ 74973934 (-) True G1409768
TU1610714 lncRNA downstream 13059 74973095 ~ 74973566 (-) True G1409769
TU1610703 lncRNA downstream 58611 74924678 ~ 74928014 (-) True LOC110492703
TU1610694 lncRNA downstream 62396 74922068 ~ 74924229 (-) False LOC110492703
TU1610684 lncRNA upstream 2234 75017613 ~ 75024741 (-) True G1409752
TU1610742 lncRNA upstream 46809 75062188 ~ 75062682 (-) False G1409794
TU1610743 lncRNA upstream 46809 75062188 ~ 75062682 (-) True G1409794
TU1610758 lncRNA upstream 73748 75089127 ~ 75090666 (-) True G1409806
TU1610768 lncRNA upstream 100354 75115733 ~ 75115957 (-) True G1409816
XM_036947803.1 mRNA downstream 1790 74924763 ~ 74984835 (-) False LOC110492703
XM_036947804.1 mRNA downstream 2839 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA downstream 2839 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA downstream 2839 74924763 ~ 74983786 (-) False LOC110492703
XM_036945805.1 mRNA downstream 80827 74900487 ~ 74905798 (-) False LOC118939467
XM_021564530.2 mRNA upstream 14228 75029607 ~ 75046973 (-) True LOC110491183
XM_036945806.1 mRNA upstream 356241 75371620 ~ 75372905 (-) True LOC118939468
XR_005036630.1 mRNA upstream 584655 75600034 ~ 75615100 (-) False LOC110492917
XM_036947815.1 mRNA upstream 584655 75600034 ~ 75615122 (-) True LOC110492917
XM_036947820.1 mRNA upstream 1088830 76104209 ~ 76119590 (-) False LOC110492699
TU1610267 other downstream 138688 74845104 ~ 74847937 (-) False G1409430
TU1610270 other downstream 138688 74845104 ~ 74847937 (-) False G1409430
TU1610200 other downstream 247436 74736433 ~ 74739189 (-) False G1409407
TU1610805 other upstream 353511 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 419675 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 740399 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 848450 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 925328 75940707 ~ 75941802 (-) False G1410288

Expression Profile