RNA id: XM_021564530.2


Basic Information

Item Value
RNA id XM_021564530.2
length 5296
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110491183
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 75029607 ~ 75046973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATTGAGGCAGGGGTGAGAGGTACCCATGAGATGTTTTGAGAATTTTTatacaattatttatttaaataaaaatggCCGCCGTAGAGAGCGGAGACGAGAGACTCAGTGAGGAGAAGAGTGAAGATGCCAACCAGAATCAGAGCTCCAACGACAAGTACCCTAAGACACACAGCAAGCCAAAGAAGGTGAGGCGGGAGTGGAGGGATATGGAGAAGGAGAGGCTGGAGTCTTCATCCACCACCACTatgtcctcccctcctcatcctccagtcCAGCAGCCCAGTGCGCACCTGGCTGAGGCGGGGCCCTCGGTGCCCATGGTTACTGCAGTTGGCGAGGCCTCGGCTCTCTCTGAGTCCCCTGCTTCGCCCAAACAGAGGAGGTCCATCATCAGGGACCGAGGTCCGCTCTACGACGACCCGTCTCTACCCCAGGGCTGGACACGTAAACTCAAACAACGCAAGTCTGGGCGGTCCGCTGGGAAGTTTGACGTCTACTTGATGAACCCAGAGGGGAAAGCCTTCCGTTCCAAGGTGGAGCTGATTGCCTTCTTCCAGAAGGTAGGAGACACCGCCACCGACCCCAACGACTTCGACTTCACCGTGACAGGGCGTGGCAGTCCCTCCCGCCGCGAGAAGAGACCCCCAAAGAAACCCAAGGTAATGAAACCGTCAGGGAGGGGCCGGGGTCGGCCGAAGGGGAGTGGGAAGTTACGCCCGGCCATGGAGGGCGTGGCAATGAAGCGTGTGGTGGAGAAGAGTCCTGGGAGGCTCTTGGTCAAAATGCCTTTCAGCGCATCCAAGGCATCTGAAGTGGCGGGGCAGCCGCCATCGCAGGTCGTAGTCGCCAAGATGCGCCCGGCGTGGAAAAGAAAGGCGGACACACAACCGCAGACTGCTCCGAAAAAGCGGGGGCGTAAGCCAGGGTTGGTGTCAGCGGCAGTTGGTGCGGCGGGTTCCAGTACTTCCTCCTACGCAGCGGCTGCTATCCTCGCCGCAGAAGCCAAAAGGAAAGCTCAGAAGGAGTCTTGCACTAAGCCGGTGCAGCAGACCGCTCTGCCCATCAAGAAGCGCAAGACCAGAGAAACTGTTGAGGAGTCGAGAGACATTCCAGCTATAGCCGGGGCAGGGATAAGGACAGGGAGTgctgtggtggtggcagcagcagagAGGACAGACCAGGGACAGAAGGATCAGGGACAGAAGCTGCCAAAGAGTCCAGGGAGGAAGCACAAGGACAGTCCCGTGACTGCCGGGCTGTCCGCAGAGGACAGTGGTGGGGCCAGTGGAGGCGGCAGCAGCAGTAGCGTCACTACCCCAAAGAGTCACAGCCACAAGAGAAAAGAACGTACGCCGCACAAACAccttcatcaccaccaccaccaccgtcgCCACAGTCActtctctgtagtggaggatcctcctcccccaccctcccagcGGCCCCCTCACCACCACCGTCGCCACAGTCACTCCTCTGTAGTGGAGGatcctcctcccccaccctcccagcAGCCCCCTCACCACCACCGTCGCCACAGTCATTCCTCTGTAGTGGAGGatcctcctcccccaccctcccagcGGCCCCCTCACCACCACCGTCGCCACAGTCACTCCTCTGTAGTGGAGGatcctcctcccccaccctcccagcGGCCCCCTCACCACCACCGTCGCCACAGTCACTCCTCTGTAGTGGAGGatcctcctcccccaccctcccagcGGCCCCCTCACCACCACCGTCGCCACAGTCATTCCTCTGTAGTGGAGGatcctcctcccccaccctcccagcGGCCCCCTCACCATCACTTCCCCGGCTTGACTATGAGCCTGGTCTCCCATACAGCCAGGGCCTTGTTGGGGACAGGGGCCCTCCTGCAGAATGAGCCCCAGGACCTGAGCACCTCCAGGGGCCCCTGCCGGGCCAGCACCACCACggccagaggaaagagagaggaggtcagGGAGGTCAGACAGGACAGGTGTCCAAAGCCTCCGGCAGCTGCAGTGGTGGGAATGGGTGACACCAGGGCCAACAAGCATCAAGTGGACGTGGCAGCAGGGACGGTGGAAGGGAGGGATTTGAGAGACATTGTATCCTGCTTAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTGGTACCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTACCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGTGAGGAGACGGTCTCAGTCGTACCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGGCGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGGCGGTCTCAGTCGTCCCCAGACCTAGCAGGGAGGAGACGGTCGAGTCTCGGACGCCGATCACTGAAAGGGTTAGTTGACTGCATTGCAGGACCCATGTCTgtaaggagggaggagacggtCGAGTCTCGGACGCCGATCACTGAAAGGGTTAGTTGACTGCATTGCAGGACCCATGTCTgtaaggagggaggagacggtCGAGTCTCGGACGCCGATCACTGAAAGGGTTAGTTGACTGCATTGCAGGACCCATGTCAgtaaggagggaggagacggtCGAGTCTCGGACGCCGATCACTGAAAGGGTTAGTTGACTGCATTGCAGGACCCATGTCTgtaaggagggaggagacggtCGAGTCTCGGACGCCGATCACTGAAAGGGTTAGTTGACTGCATTGCAGGACCCATGTCAGTAAGGAGGGAGGAGACGTTTAGTGCAGCAGTGGATTTTATaagaaaacaacaaacaaaaaatgtgtaCATAAAATCAAAAGGCAGCTGTTGGTTGATGTTCTTTCTGTGGGATGGGCTGTTTATTGACAAACAAATAACGCAGCTTAATGAACAACCCACAACAGATTGCTTcctgatacatttttacatgtttttgttgttgtttttttgtcattgTTTTGTTCTTTGTTTCTGCTTTAAACCTGTTAGTCATCCACTGCGACCCATGATCCTTTGCTCAAAGCTTACAGGACGTGGAGGACCTACACTTCCTGTATACATCATCAGCCGGAAACTATGGAATCCATGGTTTAAGATATCATTGTGAAAATGGGACTGAAACAGGGTTGGATTTGCCTAAAGCCAAGGCACCTGTCCTGTCTGGCCCTTTATAAGTGACTTGTCAATGTCGTTGTTCTGTGCTCCGTGGATAGAGGCCTCGCAATATACATATGCCATGCAAGCTTCCAATGCTTCTGTTGTAGCATCCTCTTACTACCGCAGTACGCTCAGGatgagtccaaaatggcacccgattccccaTTTTAATGCACAActcatagggtcctggtcaaacagtgtgcactgtgtagggaatcgggtgccattttggatgaagCCTCGATTTTCAGTTCACGCTCTACAGTCCAGGCCTATTCATTTAGGTGACATATGTTTTCCTCAACCTATATTATGTCAattcgtcccaaatggtaccctattccctatgtagtgcactactttagaccaggacccctaaaagtagtgcactactttagaccaggaccactaaaagtagtgcactactttagaccaggacccctaaaagtagtgcactacatagagaagaGGATATCATTTGGGACTCACCCTGAAGCTTTGAAACTAAAACACTGTTGACGCTGACAGATAACTTCCTATCTGATGGTTGAGGTGATGAAACCACAGGGTTTTAGAGGCCTAGATACACCAACGACGTGTGGTTTGATGAACGTTTGGCTACTGAAAAACAGGTTTCATTTGATTTCAATGTGTTACAATTACAATCCTACTGATGCCTTTTCTCGTCGTTTACTTATGTAATGGAGGCTGACTGTGCTCCCACAAATAAACAGAAGCAAATAATcattaaaactgtattttttatttgtatttttttttactagtAATGCAAATTATATAATACATGAACATTGTACCCAGTTTCTCCTAAATTGAAGTGTTTCCCCAACAGTCAGACAGGAAGCTAAAAGCACAACTGGACCCAGGCCTTATTATAGCCAATGCTCCATGGATTCgtcacatttttttgttgttgttgtcaataCCTAAAGTATCAAAAGTTTTCTAATACTCAAATTACATCCCAAAGACATTATCAATAACCAAACCCACTGGAGGAAGTGATGCTGTTGTCTGTTGTGTAGGGGTGGGAAAAAAGGTAAATAATTAAAAGGTAGACAGCATCGTGGGCCAATTTCCACTACAACTAGGAGCGTCGAGGCTCAACTTCTCCACTGTTTTGGTCCCGTTAAAAATCTAAACCAGTACACTTGTGCAGATACTGTGTGAGAGCTCTCTACttgctcatctcaatatctccgCTACTGTTCGTGACAACGTCATTTAGTCAAGTCTactttattttaaatgtattcagttcagttctaaaaatgtatttaaatagagGATTGATGATTAAATATTCCAGTTTTGACGCAGCCACTGGATGTCAACACAATGCTCCTTTGTGCCGTGCGACTGCATTATCTTCTGCGCCATGCGACTGCATTATCTTCTGCGCCATGCGACTGCATTATCTTCTGTGCCATACGACTGCATTATCTTCTGTGCCATGCCACTGCATTATCTTATGTGACATACAGCTGCATTATCTTCTGTGCCATGTGACTGCATTATCTTATGTGCCATGCGACTGCATTATCTTCTGTGCTGCGGCGACATTATCTTATGTGCCGTGCGACTGCATTATCTTCTGTGCCATGTGTCTGCATTATCTTCTGTGCCATGTGACTGCATTATCTTCGGTACCATGTGACTGCATTATCTTCTGTGCCATGCGACTCCCTTATCTTATGTGCATACCACTGCATTATCTTCTGTGCCATGCGACTCCATTATCTTCTGTGCACACACCTGCATTATCTTCTGTGCGTGCAACTGCATTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610684 lncRNA downstream 4866 75017613 ~ 75024741 (-) True G1409752
TU1610717 lncRNA downstream 34346 74994846 ~ 74995261 (-) False G1409772
TU1610718 lncRNA downstream 34346 74994846 ~ 74995261 (-) True G1409772
TU1610713 lncRNA downstream 55673 74971324 ~ 74973934 (-) True G1409768
TU1610714 lncRNA downstream 56041 74973095 ~ 74973566 (-) True G1409769
TU1610742 lncRNA upstream 15215 75062188 ~ 75062682 (-) False G1409794
TU1610743 lncRNA upstream 15215 75062188 ~ 75062682 (-) True G1409794
TU1610758 lncRNA upstream 42154 75089127 ~ 75090666 (-) True G1409806
TU1610768 lncRNA upstream 68760 75115733 ~ 75115957 (-) True G1409816
TU1610775 lncRNA upstream 89162 75136135 ~ 75136489 (-) True G1409823
XM_036947807.1 mRNA downstream 14228 74986625 ~ 75015379 (-) False irak1
XM_036947808.1 mRNA downstream 14228 74986625 ~ 75015379 (-) False irak1
XM_036947809.1 mRNA downstream 14228 74986625 ~ 75015379 (-) True irak1
XM_036947803.1 mRNA downstream 44772 74924763 ~ 74984835 (-) False LOC110492703
XM_036947804.1 mRNA downstream 45821 74924763 ~ 74983786 (-) False LOC110492703
XM_036945806.1 mRNA upstream 324647 75371620 ~ 75372905 (-) True LOC118939468
XR_005036630.1 mRNA upstream 553061 75600034 ~ 75615100 (-) False LOC110492917
XM_036947815.1 mRNA upstream 553061 75600034 ~ 75615122 (-) True LOC110492917
XM_036947820.1 mRNA upstream 1057236 76104209 ~ 76119590 (-) False LOC110492699
XM_036947827.1 mRNA upstream 1514284 76561257 ~ 76637349 (-) False LOC110492709
TU1610267 other downstream 181670 74845104 ~ 74847937 (-) False G1409430
TU1610270 other downstream 181670 74845104 ~ 74847937 (-) False G1409430
TU1610200 other downstream 290418 74736433 ~ 74739189 (-) False G1409407
TU1610805 other upstream 321917 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 388081 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 708805 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 816856 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 893734 75940707 ~ 75941802 (-) False G1410288

Expression Profile