RNA id: XM_036947824.1


Basic Information

Item Value
RNA id XM_036947824.1
length 3790
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110492709
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76561257 ~ 76642094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggaccaggggaggaggagatgttCCCCAGAGGAGGAGGACTAGGGAAGAGAAAGGGTTTCTCCATGGGCTGTCCCGGTGAGGAGCGTGGTGGTGGGGGTCCAGATCCCTCCTCTTCCTGTATAGAGCACCCAGTTCAGATGGACTACAGACCAGACCTCCTGGACCTCAACCAGAGACCCTCCAACATCATCATGTTACGCATGCTGCCACCCAACGCTACTGCcaacgagatccgTGCCCAGCTTCAGGACCAGGGGATTGACCCAACAGAGGTTATGATTCGCCTGATGACAAACAAGTCTTCAGGTCAGAGCCGTGGATTCGCCTTCGTGGAGTTTAATCACATACAGGAGGCCTGCCGCTGGATGGAGACCAATCAgaTGGTTCTGTCTGTCCTAGACCAGAGGGTGTCTATGCACTACAGTGAACCTAAACCACGGGCCAACGAGGACTGGCTCTGTAACAAGTGTGGGGTTCAGAACTtcaagaggagagagaagtgcTTCAAGTGTGGTGTTCCCAAATCAGAGGCAGAGCTGAAACTGCCCCAGCTGAGGGAGTTACCCCTGGGGGTGCATCAGATGGATGGTGCCCAGGGATTACTGCCCCTCCATGCCCTTTACCAGCCTGCTGCTGCCACCTCTACTGCCCTCACCAAGGCCGGGGCAACTAACACACAACAGCCTGAGGTGGCCAACGACActctgATCCTGAGGAACCTGGGTCCCCATACCTCCCTGGAGTCCATCCTGTCCACTCTGTCTCCCTTCGCTACTCTGTCCCCTTCGAATGTTCGACTGATCAAAGATAAGCAGACACAACTCAACCGGGGCTTCGCTTTcctacagctgtctactatagtgGAAGCATCTCAGCTGCTCCAGATCCTGCAGGCCTTACAGCCAACTCTCTCTATAAACGGGAAGGCCATCTCTGTTGAGTTCGCCAAAGGATCCAAAcgggATGTGTTTCTGACTGATGGTAGTAGAGTGAGTGCTGCTACAGCTGCCAGTACAGCCATCGCTGCTGCCCAGTGGTCTGttacccagAAGGCCCAGTCCCTGTCCTCTACCTCCCGGCATGGTGTGGATGTGGGGTTGTACCACCAGGGGGCAGCAGTAACCCTGGGAGTCTGTGAAGAAGAGGAGAACCTGGACTACAAGGCCCAGACAGTGGTAACAGtggtctCGTCTGAGGCTGTGGTTTCTGGAGTGGACGGCGTACAGCTGTCTTTGGGACAATCACAAGCTCCGCTCATCACTACGGCAACCACACAGCAGGTAGAGATAGTGGGTAAGCCTCAGCCTCCTACTCCCCCCCACCCTGCCACCCCCGGAACTGCACACGAGTACCAACAATAccCGGTCCCGGACGTGTCCACCTACCAGTATGAGGAGAGTTCTGGCTACTACTACGACCCTCTAACTGGACTCTACTACGACCCCAattcacagtacTACTATAACAGGGTCACTCAGCAGTATATGTACTGGGACGGAGAGAAGCAGACATATATTCCAGCTCCCGCCCAATCAACTGAGACGGTTGTTGCCCCCGGTGATAACACCGCCCCCTCTAACCCCCCCTCTGCTGCCCTCGGGGGCAAGGAGAAGAAAGACAAGCCCAAAAACAAGACAGcacaacagATAGCGAAGAACATGGAGCGTTGGGCTAAGAGTCtgaacagacagaaagagaacgttcgctctctctcctcttcctcctccgtgACCCCTGTGACCTCTATGGCTCTTTCCCCTGGTGACACCTGGGCTCCTGGACTCGGTCGCCTTGACGACCGCAGAGAGTCCGCCAGCGCAGACGCCGGATATGCTGTCCTGGAGaagaagGGGGCGTTGTCTGAAAGAGCTCAGATCATCCTGGACCAGCTCAGACACACAGACCACAGAGAGcgctCCCCTCAGGTGCAGGGTTTGGTGCCGGCCTACAATGGAGAGACggacagcgagggagaggagggaggagagaaggatgagaggatgaCAGACTGGGCTAAGCTGGCCTGTCTGCTGTGTAGGAGACAGTTCCCCAACAAGGAGGCTCTCATACGACACCAGCAGCTCTCAGAGCTACACAAGCAAAACCTGGAACAGAGGTCGTCTCAGCAGGAGGGGGGAGCtgcggagaggagggagaaaggtctCCCCACCGAACCACCAGACCCCAAGAAGAGGAAGTACAGCCCCCTtgatggTACGGCTGGCAGTAGTCTAGGTGCCAGGATGCTGCAGGGAGGGGTGAAGAATGGCCTGCTGCTACGTAACATGCAAGTggactgacctctgacccctgactgTTAACCCGctccagggtgaagtttcccctaggtctGTACAGATCTTGGATCAGCTTCCCCTTCCCGAATCctaatctatttttttttttttaataaacacTTTTTACCACTTTTTCGTGGTATTCATTTGGTAGTTCGTTtcgtcgctgcaactcccgtacggactctggagaggcgaaggtcgagagccacgcgtcctccgaaacacgaccctgccaagccgcactgcttcttgacacaatgcccacttaacccggaagccagccgcaccaatgtgtcggaggaaacaccgtaacacctggcgacctggtcagcgtgcactgcgcccggcccgccacaggagtcgctagagcacgatgagacgAGGACATCCCTGCCGGACGAAACCTCCCcgaacgacactgggccaattgtgcgccgcctcatgggccTGCGACACAGCCttggatcgaacccaggtctgtcgtGTCGCCGTAGACcgttgcaccactcaggaggcacCCGAATCCTAACCATTAGTGGGAAAATCGAATCGCTGCAGAGGAAGCCGATATATGACATCAACGCTATAGGAGATCAATATGGAGCTGACCAACAGCGGCACGCCACGGACGATAGAAAGGACATTTTTGATAACCACTGGCATAAACGATTCTCAACACATATGATATTATAAGCAATTTTACAATGGAAATAGGCCTTTAATCTGTTACATTCACTGATAACATTGACTCTACATTGAGATATTTGATGTGGAAACAAGTCTGTGACTTGGCGAACGGTAGTCCTTAATAAGAGCATTTACCCGTGATGTGGTGGTCCTCAGAAcggaaaaggttgggaaccactggtctatacATCACCCTTTGTTTGATTGGAAACGGTATGTAATTCTGTGAGAGTTTTATATTAATAGTTATCCATTAATACTTAACAAATAGGAAGACATTTCTGCTGTACTAGTGTCTGTGTTTTCATGGGCTCCACTCCAGTTCCCTGCAGCTAACCTGGGCGTATGGTCACCCGAGATGGCTTGAGCTGAGAAATGTGTTAAAGACTGCATTACAGAGAGAATCATGTGTTTTACTAGAGATAGCTTAGGAGTAGAACAATCCCTCGTTGTCTCTAAATCATCCTTGCAACTGGGAAACTAAGCCAGGGTGAGGTTAAGACAACAACCCTGTGTAGATAACGACAGGATGAACCCAGAGTGACTTATGATGGTCCTTGGTCTGCATGGGAGGGGTGGAACCAGCCATGACTAAGCATTCTTAGTGTCAGCTATATGAAGAACTCTGCATGTCTGTAAAAGGTTAGGCTGCTTGGCCCAACAGTCAATACTGTGGGGTTGACTAGTCTGTCTGTAAAGGTTAGGCTGCTTGGCCCAACAGTCAATACTGTGGGGTTGACTAGTCTCATCATTGCAATAActaatcaatattaaataaagatgattgtttgaagaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1611899 lncRNA downstream 1530 76559469 ~ 76559727 (-) True G1410697
TU1611898 lncRNA downstream 3680 76557040 ~ 76557577 (-) True G1410696
TU1611914 lncRNA downstream 16395 76543171 ~ 76544862 (-) True G1410705
TU1611756 lncRNA downstream 141943 76419064 ~ 76419314 (-) True G1410588
TU1611755 lncRNA downstream 142265 76414286 ~ 76418992 (-) True G1410587
TU1611947 lncRNA upstream 9777 76651871 ~ 76655077 (-) False G1410732
TU1611948 lncRNA upstream 9777 76651871 ~ 76654752 (-) False G1410732
TU1611949 lncRNA upstream 9777 76651871 ~ 76654752 (-) True G1410732
TU1611974 lncRNA upstream 32195 76674289 ~ 76674671 (-) True G1410739
TU1611959 lncRNA upstream 58390 76700484 ~ 76703457 (-) False G1410734
XM_036947820.1 mRNA downstream 441667 76104209 ~ 76119590 (-) False LOC110492699
XM_036947815.1 mRNA downstream 946135 75600034 ~ 75615122 (-) True LOC110492917
XR_005036630.1 mRNA downstream 946157 75600034 ~ 75615100 (-) False LOC110492917
XM_036945806.1 mRNA downstream 1188352 75371620 ~ 75372905 (-) True LOC118939468
XM_021564530.2 mRNA downstream 1514284 75029607 ~ 75046973 (-) True LOC110491183
XM_036947828.1 mRNA upstream 15809 76657903 ~ 76693758 (-) True usp21
XM_036947834.1 mRNA upstream 63695 76705789 ~ 76743937 (-) False LOC110514470
XM_036947833.1 mRNA upstream 63695 76705789 ~ 76756145 (-) False LOC110514470
XM_036947829.1 mRNA upstream 63695 76705789 ~ 76756146 (-) False LOC110514470
XM_036947830.1 mRNA upstream 63695 76705789 ~ 76756146 (-) False LOC110514470
TU1611897 other downstream 3083 76557040 ~ 76558174 (-) False G1410696
TU1611706 other downstream 249310 76290155 ~ 76311947 (-) True G1410557
TU1611716 other downstream 252413 76254916 ~ 76308844 (-) False G1410557
TU1611714 other downstream 287232 76254916 ~ 76274025 (-) False G1410557
TU1611711 other downstream 302211 76253221 ~ 76259046 (-) False G1410557
TU1611910 other upstream 686 76642780 ~ 76645664 (-) True G1410701
TU1612017 other upstream 150326 76792420 ~ 76795053 (-) True G1410773
TU1612024 other upstream 153489 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 154272 76796366 ~ 76797111 (-) True G1410776
TU1612210 other upstream 319376 76961470 ~ 76972119 (-) True G1410911

Expression Profile