RNA id: XM_036947828.1


Basic Information

Item Value
RNA id XM_036947828.1
length 2559
RNA type mRNA
GC content 0.48
exon number 12
gene id usp21
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76657903 ~ 76693758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCATTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCATTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCATTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCCGGTGATGGTTGGAGACCTGACAGACTACAGCATTACAGCGGGTCATGGTTGGAGTAGAGGAGATATATCAATTAAACAACCAGAAGCCTCGTTGACTTGAACCAGCAACCTAGCCGATACAGGAccaggagaccagtcaactcatTAGTTTCTGCGCCGTAGAGTTGGGGACCTCTTTGACTGTGGTAACGATGCCGGCAGAAACGCGTGTCACCGTGGACGGGACCTGCCAGGCTCTGTGCAAAACCCTTGTCTCTCAGAATGGGATCCAGAGAAACACGGCTGACATCTCCAAGTCTCTCCTCTACACATCACTGATGGGGCTGCTACTGGTTGTAGACAAAGAGAAAGAAAAGCTCAAGGTTGGGAGTGGAAGAGTCGGCCTTCGTAACGTAGGAAACACGtgttttCTGAATGCGGTGGTTCAGTGTCTATCTCACACCAGAGGTCTGAGGGACTACTGTCTGGTCAAAGCCTACAGACAGGAGATGTGCAGTAGAGAGGAACCACACCTCATGGAGGCGTTCTCCCAGGTGCTGTTGAGTCTCTGGGACGTGAACGAAGAAAACCATAACACAGAAGTGAATCCTGGGAAGTTCTACAGCATCTTCAAAGACGCGGTGCCTTACTTCAGCGGATACAGTCAACAGGATGCTCAGGAGTTTCTGAGGTTCTTATTGGACAGGCTTCACTGTGAGATCAACCGCCGGCCGTACGTCCGGCTCACCAGCCTGGAGCCTGAACCCAAATGCACCACAGTCAGgattGACGAGCAGGCGTCTGCAATGTGGAAGAGACACCTGGAGAGGGACGACAGTAAGATCGTAGatctgtTTACAGGTCAGCTGCGTAGTTCTCTCCACTGCTCTGTGTGTTCTCACTACTCCACCTGCTTCGACGTCTTCTGCGACCTGTCTCTACCCGTCCCTAAGAGGAGTGCAGCAGGGGGCGGGTCTCTGAGGGAGTGTCTTGATCTGTTCACACAGGAAGAGAAGCTGGACGAGGAGAACGCTCCCATGTGCGAGAGGTGTAACAGACGGACAGAGAGCACCAAGAGGCTGACCATCCAGAGATTCCCACAGGTCATCGTCATGCATCTGAACCGGTTTGCCATGTCGCGGTATATGGTGTGTAGGAGTACAGTGTGTGTCTCCTTCCCTCTGACCAGCCTGGATTTGGGGCCCTACGGACCGGTTGACTGTggtccCGTGTTGTATGATCTGTATGCAGTGTGTAACCACAGTGGGACAGTCAACATGGGCCACTACACAGCCTGTTGCCTGGAGAACGACGGATCGGGATGGTGCTGTTACAACGACTCCTGTGTGACTCCTATATCAGAGAACCAACTGCAGTCTGCTCAGGCCTACGTCCTCTTCTACCAACGCAGGAAGTGAACCATCGGGTAGCCAATCACTACAGCTGTAACTGCAAGCATAGCATTCAGCAGCCAATCAGAAAAACTGTTACTACAAGCAGAGCTTTCAGCAGCCAATCGCTACAGCTGTTACTACAAATGGAATATTACAAACAGCTGTGATGTAGCGCTATTGTAACCAAGCAACCAGCATCTCAACCAACTGGTCTGATGTTGGACTACTTGAGGTTTGAGTGAGTGTGAGTCTGGGACAAAGACAGCACAAAGCGATAGGAAGACAGAAGAATGGAATAGACGGcttgggtgaggagaggagaaagagaagaccAGTGTAGGAGTGTTCCTAGCCAGCTCAGCtaggagcatgtgtgtgtgtgtgtgtagaccttcagttcaaacagacagttatcattggacacacacacacagccatgagGAAACATGTTATCGGACACTATTAACTTGTGCTACACACCAACTAACCAACTATCAGACAGAGAAGCCTTCAGAATATGCTGTGTTATAATAGTCTAGACGACGTCTGTACTGGTAGAAACattaattaaaaacatttttaaaaaagtcgctttttatttttatgctgctaaaaatatatatatacatttttctaaatTAACAATTATTTAAATTATAATTTATTTAAATAATCACTTGTTTTTCCTTTCTTATTTAacttaattcatttgattaaaaTGTGGAGAGTTTTGTTCCGCTTTTTCTTGTCAAGTGCAAACGTAAATAAAACTGGTGAGTTGGTATGACGTTATATTTAAATAAAACTGGTGAGTTGGTATGACGTTATATTTAAATAAAACTGGTGAGTTGGTATGACGTTATATTT

Function

GO: NA

KEGG:

id description
K21634 USP21; ubiquitin carboxyl-terminal hydrolase 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1611947 lncRNA downstream 2826 76651871 ~ 76655077 (-) False G1410732
TU1611948 lncRNA downstream 3151 76651871 ~ 76654752 (-) False G1410732
TU1611949 lncRNA downstream 3151 76651871 ~ 76654752 (-) True G1410732
TU1611941 lncRNA downstream 27083 76630512 ~ 76630820 (-) True G1410726
TU1611940 lncRNA downstream 27467 76630236 ~ 76630436 (-) True G1410725
TU1611959 lncRNA upstream 6726 76700484 ~ 76703457 (-) False G1410734
TU1611962 lncRNA upstream 6726 76700484 ~ 76703457 (-) False G1410734
TU1611967 lncRNA upstream 6726 76700484 ~ 76702027 (-) True G1410734
TU1611987 lncRNA upstream 54476 76748234 ~ 76749205 (-) True G1410750
TU1611990 lncRNA upstream 63902 76757660 ~ 76757962 (-) True G1410753
XM_036947824.1 mRNA downstream 15809 76561257 ~ 76642094 (-) False LOC110492709
XM_036947825.1 mRNA downstream 15809 76561257 ~ 76642094 (-) False LOC110492709
XM_036947826.1 mRNA downstream 15809 76561257 ~ 76642094 (-) False LOC110492709
XR_005036632.1 mRNA downstream 15809 76561257 ~ 76642094 (-) True LOC110492709
XM_036947827.1 mRNA downstream 20554 76561257 ~ 76637349 (-) False LOC110492709
XM_036947834.1 mRNA upstream 12031 76705789 ~ 76743937 (-) False LOC110514470
XM_036947833.1 mRNA upstream 12031 76705789 ~ 76756145 (-) False LOC110514470
XM_036947829.1 mRNA upstream 12031 76705789 ~ 76756146 (-) False LOC110514470
XM_036947830.1 mRNA upstream 12031 76705789 ~ 76756146 (-) False LOC110514470
XM_036947832.1 mRNA upstream 12031 76705789 ~ 76756146 (-) False LOC110514470
TU1611910 other downstream 12239 76642780 ~ 76645664 (-) True G1410701
TU1611897 other downstream 99729 76557040 ~ 76558174 (-) False G1410696
TU1611706 other downstream 345956 76290155 ~ 76311947 (-) True G1410557
TU1611716 other downstream 349059 76254916 ~ 76308844 (-) False G1410557
TU1611714 other downstream 383878 76254916 ~ 76274025 (-) False G1410557
TU1612017 other upstream 98662 76792420 ~ 76795053 (-) True G1410773
TU1612024 other upstream 101825 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 102608 76796366 ~ 76797111 (-) True G1410776
TU1612210 other upstream 267712 76961470 ~ 76972119 (-) True G1410911
TU1612655 other upstream 471700 77165458 ~ 77165823 (-) True G1411281

Expression Profile