RNA id: XM_036947830.1


Basic Information

Item Value
RNA id XM_036947830.1
length 3776
RNA type mRNA
GC content 0.54
exon number 26
gene id LOC110514470
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76705789 ~ 76774764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCGAGGAAAGAGTATCTACCTCTGCCATTTTGGTTTTTGTTCCCGTCTTGTGCTCGCAAATACAGGAACGCGAATACACAGGACTCGACCAGCTAAACGACATAGTGACTCGACATTATAGTCCGAAACCTTTTCAccccattttttatttatttttgtcagcAGAACAATCATCGTTATTGACGTTTACACACAAGAGAGGAGCGGTTTGCACAGAGAAGGGACAGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCGTGTCAGACTCAGAGACGAAGACGGGATCTCACTGCTCCTCCTCTAACTCTGTCAGAACTGAACTGTCTCACACACCCACCaacGGCATGGCTAAGAATGGCAATGATGCTGAGATCGATGAAGGCCTGTACTCCAGACAGCTCTACGTGTTGGGCCATGATGCTATGAAGCGCATGCAGAGCTCCAACGTCCTGGTCTCAGGGCTGACAGGGCTGGGCGTGGAGATCGCTAAGAACATCATCCTGGGAGGAGTCAAGAGTGTTACCCTGCACGACCAGGGACAGGCCGAGTGGAGAGACCTCTCCTCACAGTTCTACCTGAGAGAAGAGGATCTGGGAAAGAACAGGGCTGAGGTGTCTCAGACTCGCCTGGCTGAACTCAACAGCTACGTACCAGTAGTGGCCTACACTGAAGCCCTCACCGATGATTACCTGACTCAGTTTCAGGTTGTGGTCCTGACCAACTCCCCTCTAGAAGAGCAGCAGCGTGTCGGAGACTTCTGTCACAGTAACGGCATCAAGCTGGTGATCGCTGACACACGGGGACTCTTCGGACAGCTCTTCTGTGACTTCGGAGAGGAGATGCTGGTGATCGATACCAACGGAGAGCAGCCTCTCTCTGCTATGATCTCCATGATCACCAAGGATGCAGCAGGCGTGGTGACGTGTTTGGACGAGGCTCGCCACGGGTTTGAGAGTGGAGACTCTGTGATCTTCACTGAGGTGCAGGGCATGACGGAGCTCAACAGCTGCCAGCCAATAGAGATCAAGACCTTGGgCCCCTACACCTTCAGTATCTGTGACACCACAGGTTTCTCCGACTACGTCAGGGGAGGCATCGTCTCTCAGGTCAAGATGCCCCAGAAGGTGGCCTTCaaatCCTTCACCACTTCCATGACAGAGCCAGAGTTTGTGGTGACAGACTTTGCTAAGTTTGAGCGACCAGGACAGCTTCACCTGGGCTTCCAGGCTCTACACAGCTACCAGAGGAAACACAGCAGGCTGCCCAAGCCCTGGTgccagGCTGATGGAGAGGAGTTGGTGTCCCTGGCTAAAGAGGTTAACTCCAGCCAGACGGGGTCAGCTAAGGTGGACGAGCTGGATGACAAGCTCATTAAGAAACTGGCCTTTGTCTCCGCCGGCGACCTGGCACCAATCAACGCTTTCATTGGTGGACTGGCCGCACAGGAAGTAATGAAGGCGTGTACAGGGAAGTTCATGCCCATGATGCAGTGGCTGTATTTTGATGCTCTGGAGTGTCTGtctgaggaagagggaggagccATGCTCACTGAGGAGGACTGTGCCCCTagGAACAGTCGTTATGACGGCCAGATCGCTGTGTTTGGCTCCCAGCTGCAGGAGGAGCTGGCTAAACAACGTTACTTCCTGGTTGGGGCTGGCGCTATTGGCTGTGAGCTGCTCAAGAACTTTGCCATGATTGGATTGGCTGGCGGAGAGGGAGAGGTCATCGTGACAGACATGGACACCATTGAGAAATCCAACCTCAACAGACAGTTCCTCTTCagGCCGTGGGACGTGACGAAGATGAAGAGCGAGACGGCGGCGGCGGCGGTGAAGCAGATGAACCCGTCCATCCGGATCACGGGACACCAGAACCGCGTCGGGCCCGAGACGGAGCGTGTCTACGATGACGACTTCTTCGAGAGCCTCCACGGAGTCGCCAACGCTCTGGACAACGTTGACGCGCgtatgTATATGGACCGGAGGTGTGTCTACTACAGGAAGCCCCTGTTAGAGTCCGGGACTCTGGGAACCAAGGGAAACGTTCAGGTGGTCATTCCCTTCCTGACAGAGTCATACAGCTCCTCCCAGGACCCCCCGGAGAAGTCCATCCCCATCTGCACACTGAAGAACTTCCCCAACGCCATCGAACACACCctgcagtGGGCCCGTGATGAGTTTGAGGGTCTGTTTAAACAGCCGTCAGAGAATGCCATGCAGTACCTCACAGATGCTAAGTTCCTGGAGAGGACCCTGAAGCTGCCTGGAGCGCAGCCTCTAGAAGTGTTGGAGGCCGTCTATAAGAGTTTGGTGATCGACTGCCCTCGCAGCTGGGCCGACTGTGTCACCTGGGCTCGCCACCACTGGCAATGCCAGTACAGCAACAACATCCATCAGCTACTGCACAACTTCCCCCCAGAACAGCTGACCAGCTCTGGCGCCCCCTTCTGGTCCGGTCCAAAGAGATGTCCTCACCCTCTGGAGTTCAGCACCAGCAATaaccTCCATATGGACTATGTGATGTCAGGAGCCAACTTATTTGCCCAGTCGTACGGCATGCAGGGCTCTACCGACCGTGTCGGTGTGGCTAAGATCCTGGACAGCCTATCGGTGCCCACCTTCGTCCCCAGGTCAGGGGTCAAGATCCACGTCTCCGACCAGGAGCTGCAGAGCGCCAACGTCAACGTCGAAAAAACTAACAAGACAGGTCCCACCTCTCGCCACCGGCCACATGACAACAGGCTGGAGGAACTGAAGACTCTGCTGCCTGGACCGGAAGCTTCTTCTCACTTTAAACTCACTGCCATCGACTTTGAGAAGGATGATGACTCTAACTTCCACATGGACTTCATTGTGGCTGCTTCCAACCTGAGAGCAGAAAACTACAACATTCcccctgcagacagacacaagAGTAAGCTGATAGCTGGGAAGATCATTCCTGCGATAGCGACCACCACCGCAGCGGTCgtaggtctggtctgtctggagcTCATCAAGATCGTTCAGGGACACAAGAAGGTGGAGTCGTTTAAGAACGGCTTCATGAACCTGGCGCTGCCGTTCTTCGGCTTCTCAGAACCCATCTCTGCTCCCAGCCACAAGtACTATGACATTGACTGGTCTCTGTGGGATCGTTTTGAGGTGAAGGGTCTGCAGGCCAATGGAGAGGAGATGACCCTCCGACAGTTCCTGGACTACTTCAAGAATGAGCATCAGTTGGAGATCACCATGCTGTCTCAGGGAGTCTCCATGCTCTACTCCTTCTTCATGCCTGCAGCTAAACTCAAGGAGAGGCTGCTGTTACCGATGACAGAGATTGTGACCAAGGTTTCTAAGAAGAAGCTGGGGAAGCATGTGAAAGCTTTGGTGTTTGAGCTGTGCTGCAACGACCTGACTGAGGAAGATGTGGAGGTTCCCTACGTCAGATACACCATCCGctgaaccaacacacacacacaccgggggggagagagtaaggagagaggatggCTTTGGATCAATCACTTGTAGAGGAAAGTTTATTGGATCCCTggttcaaaatggcaccctattccctatatagtgtaccctattccctatatagtgtacccTATTTCCCTGAACTTATAGAGACTAGGGTGCCAAACAACGATCTGAAATGACGTGTTGGGACATGGTTGTGGGGAGATTGTAAACGGGTTGGTCCCTGTACCCAACAActctgctaccccccccccccccctcaactctgctacccccccccgcccctcaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1611959 lncRNA downstream 2332 76700484 ~ 76703457 (-) False G1410734
TU1611962 lncRNA downstream 2332 76700484 ~ 76703457 (-) False G1410734
TU1611967 lncRNA downstream 3762 76700484 ~ 76702027 (-) True G1410734
TU1611974 lncRNA downstream 31118 76674289 ~ 76674671 (-) True G1410739
TU1611948 lncRNA downstream 51037 76651871 ~ 76654752 (-) False G1410732
TU1611990 lncRNA upstream 1514 76757660 ~ 76757962 (-) True G1410753
TU1612002 lncRNA upstream 19143 76775289 ~ 76775541 (-) True G1410763
TU1612012 lncRNA upstream 23372 76779518 ~ 76780764 (-) False G1410771
TU1612015 lncRNA upstream 23372 76779518 ~ 76795451 (-) True G1410771
TU1612023 lncRNA upstream 39499 76795645 ~ 76795880 (-) False G1410776
XM_036947828.1 mRNA downstream 12031 76657903 ~ 76693758 (-) True usp21
XM_036947824.1 mRNA downstream 63695 76561257 ~ 76642094 (-) False LOC110492709
XM_036947835.1 mRNA upstream 51005 76807151 ~ 76997020 (-) True LOC118939598
XM_021567163.2 mRNA upstream 345934 77102080 ~ 77104717 (-) False LOC110492706
XM_036945807.1 mRNA upstream 382543 77138689 ~ 77144798 (-) True LOC110491186
XM_036947837.1 mRNA upstream 737714 77493860 ~ 77577462 (-) False ikbkg
XM_036947839.1 mRNA upstream 737714 77493860 ~ 77582329 (-) False ikbkg
TU1611910 other downstream 60125 76642780 ~ 76645664 (-) True G1410701
TU1611897 other downstream 147615 76557040 ~ 76558174 (-) False G1410696
TU1611706 other downstream 393842 76290155 ~ 76311947 (-) True G1410557
TU1611716 other downstream 396945 76254916 ~ 76308844 (-) False G1410557
TU1611714 other downstream 431764 76254916 ~ 76274025 (-) False G1410557
TU1612017 other upstream 36274 76792420 ~ 76795053 (-) True G1410773
TU1612024 other upstream 39437 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 40220 76796366 ~ 76797111 (-) True G1410776
TU1612210 other upstream 205324 76961470 ~ 76972119 (-) True G1410911
TU1612655 other upstream 409312 77165458 ~ 77165823 (-) True G1411281

Expression Profile