RNA id: XM_036947839.1


Basic Information

Item Value
RNA id XM_036947839.1
length 2754
RNA type mRNA
GC content 0.52
exon number 14
gene id ikbkg
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 77493860 ~ 77582658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGATGGTCATGGCTAGTCCGCATTTACCCATGTCAGTCTTGCTAACCTTACCAGTCGAACGGTGTTGTTGACGGATTTTCTTTCTAATAGGCATTATATGACTAGTTGGCGAGCGAGCTGACCGTATTTCATTAGCTACCACGGTGTGTAGTTAGCGGGGGTTTGCTAAGTAAAGATAGGTTAGCTAACTAGATATAATCACCAACCACCACGATGGAACTAGAAGCGAAAGTGAAAGTAGGCTGGCTAACTCCGAGAGGACTGGCTGTTTCTCCATGAACTTGTCCAGTaacttgtttttgttgttgttatttagaAAGTTCGCGTAGAAAATAGGCGACAATTTAATTTAAGGGTGCTATTCCATTGAACCAAGTGTTTGTCGATAAACTGGACGTAATGACGATACACACAACGTTACATAACAGTGTTGATTACAAATGTAGTGGTTGAAGTGTTTCCAGAACCCATTTAGACAAGTTGATCATTACATTGGCGACAGCCTGTATGCCCTCTCACCTCATGTGGGAGTCAGCATGGATAGAACGCATTCATTGAATAATATTTGTAACACTTTTTTTATGTTTAAAAACTAGTTCACTGCATCTGACATGGAGCCCAGTTTAATAATATGACCATATGTCGCAGCTGCGTGCCGTAGTTTTGAAGTAATCGCAAAAAAAACAGGCCATGTTTTAGGGCCTTtttcaccctgctcctgtacCAGTagagcttccgtccctctcctcgcccctacctgggctcgaaccctctgcacacattgacaacagtcaccctcgaagcatcgttactcgTCGCCCCACAAAAGCAGGgaaaacaactacttcaaggtctcagagcgagtgacgccACCGCCTGAAAGCGGCATGGTGCAGCCCCAGGCAGACATGGCCCTGCAGTGGGAGATGGCAGGGGAAGAGGGTAACGTGGCTCTTCAGGTTCCTGCTGAGCTGGCAGCCAATGAGGTGGTGACTAGACTACTGGGAGACAACCAGCAGCTCCGAGaggcgtTGCAGCGCAGCAACCAGGCCCTGCGTCAGCGCTGTGAGGAGATGGAGGAATGGCAGCGGAGgtctagagaagagagagagttccTCAGCTGTCGTTTCCAGGAGGCCCGGGCGCTAGTGGAGAGACTGGCCATGGAGAACCATAGCCTCACCAGCCTGGCCAGCCCCTCTAGCCCCCCCAACCCTGGAGCGAACCAAGGCCTGCTGGTCAACGGCCCCATCCATGGCTCGGAGACCAACGGACCTATGGCATCCTCTCTGccTGTAGGAGGAGGGAACGACTTTCTCCAGCTGCTGAAGAGCCACAAAGAGGAGTTCGAAGAAGGGATGAGAGATCTGAGGAGGAGGAATGAAgagctggagaaagagagggaggagggagagagagagagagactaccttcATCGCTCGGTTGAGCAGCTCCGAAccaaactgAGTTGTGGTGTTACTGAGGAAACGGTTCAGCGTTCCGATGCCCCGCCCTCCTCTGACAGCTCCCACCTGGCCAAACTCACAGAGCAGCTTCAAGCCACACAGGGCAGgtacaaAGAGCTGCAGGAGCAGTTGGATTCCCTCCAGAAGAGTTCAGCTCAGAGAGACAGAACTGAAGTGCTGCTTAAACAGAAGGACAAAGACTGTACCCAgcTGGATAAGGATGTCGAGGCGCTGAAGGCCCAGGTGACGTCTCTCCtgggagagctgagagagagacagagctgtttGGACCGGAGCCAGCAGGACCGCAACATCCTGGACGACAGgctgaGCAGTACTCGGGAGTCATTggcagcatcagagagagagatggaacaacAGAGGAAGCAGCACTCTGTGACGGTAGACAAActactgctgcagacacacaaCCTAGAGACCGCACTGAAGACTGACCGCCTGGTTATTACTGaggagagGAGGAAGCTTGCCCAGCTGCAGCACGCCTACACCTGTCTGTTTAAGGACTACGACACCAAACTCAAGACTGAGggaggagacatgGTTGTTCGtctggaggaggcagagagagcttTGGCTCTGAAACAGGATCTGATTGACAAGCTGAAGGAAGAGGTGGAGCAACAGAGAGGATCTCTAGAGACCGTTCCTGTTCTGACTGCCCAGgctgagATCTACAAGGCAGACTTCCTAGCGGAGCGGGAGGCCAGAGAGAAATTGAACCAGAGGAAGGAGGAGCTTCAGGACCAGCTGAACACAGCGTTGGCTGAGATGGAGCGTCTGAAACAGGAGGAGAcctcaagggctcGGATGGAGAAGATGCAGCAGAGACACCTGGAGGTCTTCAGACCACCACGACCCCACATCACCCCCCAATCAGGGAGTGCCTTTAACTCCACCGCCCGCAGTGTGGGATTGGCTGCAGAGGGAGTGGCTGGAGGCGGGGCTGAAGAGCTTCCTGACTACCGCTGTCCAAAGTGCCAGTACCAAGCCCCCGACATGGACACACTGCAGATACATGTCATGGACTGTatccagtaacacacacacttagacagaTGTTTGAGGGGGCTGAAACAACAATAGCTCATCAGCATGATGACATCATTGTCATAGACCTTTCCTTCCCATCCCTGTCCACCATATACAGTCctcccccacacctccctccatatcccctctttttctctctctctccctgtccaccatATACAGTCctcccccacacctccctccatatcccctctttttctctctccctgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1612614 lncRNA downstream 125 77492466 ~ 77493735 (-) False G1411259
TU1612611 lncRNA downstream 125 77492688 ~ 77493735 (-) False G1411259
TU1612612 lncRNA downstream 125 77492688 ~ 77493735 (-) False G1411259
TU1612615 lncRNA downstream 125 77492688 ~ 77493735 (-) True G1411259
TU1612804 lncRNA downstream 18235 77475201 ~ 77475625 (-) True G1411417
TU1612851 lncRNA upstream 12070 77594399 ~ 77594730 (-) True G1411442
TU1612858 lncRNA upstream 24936 77607265 ~ 77609246 (-) False G1411449
TU1612859 lncRNA upstream 24936 77607265 ~ 77609322 (-) False G1411449
TU1612860 lncRNA upstream 25986 77608315 ~ 77609322 (-) True G1411449
TU1612864 lncRNA upstream 28437 77610766 ~ 77611074 (-) True G1411453
XM_036945807.1 mRNA downstream 349062 77138689 ~ 77144798 (-) True LOC110491186
XM_021567163.2 mRNA downstream 389143 77102080 ~ 77104717 (-) False LOC110492706
XM_036947835.1 mRNA downstream 496840 76807151 ~ 76997020 (-) True LOC118939598
XM_036947831.1 mRNA downstream 719096 76705789 ~ 76774764 (-) True LOC110514470
XM_036947832.1 mRNA downstream 737714 76705789 ~ 76756146 (-) False LOC110514470
XM_036947852.1 mRNA upstream 373270 77955599 ~ 78024975 (-) False flna
XM_036947847.1 mRNA upstream 373270 77955599 ~ 78024977 (-) False flna
XM_036947849.1 mRNA upstream 373270 77955599 ~ 78024977 (-) False flna
XM_036947850.1 mRNA upstream 373270 77955599 ~ 78024977 (-) False flna
XM_036947851.1 mRNA upstream 374309 77956638 ~ 78024979 (-) True flna
TU1612750 other downstream 142635 77349553 ~ 77351225 (-) True G1411366
TU1612655 other downstream 328037 77165458 ~ 77165823 (-) True G1411281
TU1612210 other downstream 521741 76961470 ~ 76972119 (-) True G1410911
TU1612028 other downstream 696749 76796366 ~ 76797111 (-) True G1410776
TU1612024 other downstream 697980 76795583 ~ 76795880 (-) False G1410776
TU1613409 other upstream 467937 78050266 ~ 78053138 (-) True G1411862
TU1613387 other upstream 474638 78056967 ~ 78067510 (-) False G1411845
TU1613384 other upstream 483708 78066037 ~ 78067510 (-) False G1411845
TU1613385 other upstream 483708 78066037 ~ 78067510 (-) False G1411845
TU1613386 other upstream 484033 78066362 ~ 78067510 (-) False G1411845

Expression Profile