RNA id: XM_036947847.1


Basic Information

Item Value
RNA id XM_036947847.1
length 9126
RNA type mRNA
GC content 0.54
exon number 49
gene id flna
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 77955599 ~ 78024979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggagagagagaacgggagagagcgaaaagagagagagagagaccccctgTGATACTTGACCAATTAAGGATCTCACtgtaagatagagagagagagagagagagagaaagagagagagagagagagagagagagataaaaaagaGCAAAACAGTGAAGATCTTTCTTTTTCACGAGTTCACGGAGCCCACCGGTTCTGCCCGCTGGGAGGGATTTAACGCACACCGCAACGGGAAGACAGAGTTATAGATTAAGAAAGGCCACAAACCTAAGCacagcagcgagagagagagagggagcggtcgTCCAACAGACTCCACCTCTAAACCCCAGCCAGTGAACGGAGAGACCCGACGGCATAAAAATGAGTGGTTCCCACCTCCGCCAACACCAGTCGGCCCAGCCTGCATTCAACGCCCTTTCCCCGGACAAAGAAGCAGACATGCCTGCTACAGAGAAGGACCTTGCCGAGGACGCGCCGTGGAAGAAGATCCAACAGAACACGTTCACCCGCTGGTGTAACGAGCATCTGAAATGCGTCAACAAACGAATCGCCAATCTCCAGACGGACCTGGGCGACGGGCTGCGGCTGATCGGACTCCTGGAGGTGTTGAGCCAGAAGAAGATGTTCAGGAAATACAACCAGCGGCCCACTTTCCGACAGATGCAGCTCGAGAACGTCTCGGTGGCACTCGAGTTCCTAGACAAGGAGAACATCAAGCTGGTGTCCATAGACTCCAAGGCCATAGTGGATGGTAACCTGAAGCTGATCCTTGGCATGGTGTGGACTCTGATCCTCCACTACTCCATCTCCATGCCCATGtgggacgaggaggaggaggggggtgacGGCCAGCAGAAGACCCCAAAACAGAGACTTCTGGGATGGATCCAGAACAAGCTACCAGAGATCCCCATCCACAACTTCAGCAGAGACTGGCAGAGTGGCAGAGCACTGGGGGCACTGGTCGACAGCTGTGCTCCGGGCCTGTGTCCTGATTGGGACCAGTGGGACCAGACTAAACCAGTGGACAACGCCCGTGAGGCCATGCAACAGGCTGATGACTGGCTGGGTATCCCTCAGGTGATAACCCCAGAGGAGATCGTTGACCCTAATGTAGATGAACATTCCGTGATGACATACCTGTCCCAGTTCCCCAAGTCCAAACTGAAGCCTGGCGCACCCCTCCGCCCCAAACTGAACCCCAAGAAGGCCCGCGCATACGGACCAGGTATAGAGCCAGTAGGTAACGTTGTGATGAAGAAGGCGGTGTTTACAGTGGAGACCATCAGTGCTGGGATGGGAGAGGTGCTGGTGTATGTAGAGGACCCTGCCGGACACAAAgaggagGCCAAGGTGACAGCCAACAACGATAAGAATCGTACCTACTCAGTCTTCTACATTCCTAAAGTCACTGGGATGCACAAGGTGACGGTGCTGTTTGCGGGGCTACACATCAATAAGTCCCCTTATGAGGTGGATGTGGGGATGGCTCAGGGAGACAGCAGTAAAGCTACAGCCCAGGGACCTGGACTAGAACCTGCCGGGAACATCGCCAATAAGACCACATACTTTGATGTCTACACCGCAGGTGCtggtgtgggagaggtggaggtggtgatCATGGACCCAGCGGGTAAGAAGGACGTGGTGGTGTGTCAGATAGAGGATAAGGGCAACAGTTCGTACCGCTGCACCTACAAACCCACCCTGGAGGGGGCCCACACCATCTACGTTACCTTCGCCGGAGGGCAGATCAGCAAGAGCCCCTTCACTGTTAACATAGGAGAGGctTGTAACCCCAGCCTGGTTCGGGCTAAGGGGCGTGGTCTGCAGCCCAAAGGCCTCAGGGTGAAGGAGACGGCTGACTTCAGAGTCTTCACTAAAGGAGCTGGGACTGGAGAACTCAAAGTCACCATCAAGGGCCCCAAGGGTCTGGAGGAGCCCTGTAAGAGGAAGGATCTAGGAGACGGAGTGTTTGGGTTTGAGTACTACCCCACCACCCCCGgaacatacagtataaccatCACCTGGGGAGGACAACACATCCCCCGCAGCCCGTTGGAGGTGAAGATTGGTTTGGAGGCGGGGCCACAGAAGGTGCGAGCATGGGGGCCCGGCCTGGAGAGCGGCATTGTGGGTAAATCTGCCGACTTCGTGGTCGAAGCTGTTGGAGAGAATGTGGGAACACTGGGTTTCTCAGTGGAGGGTCCGTCCCAGGCGAAGATCGAGTGTGATGATAAGGGCGACGGGTCATGTGACGTGCGGTACTGGCCAATGGAAGCAGGAGAGTATGCGGTGCATGTGCTCTGTAACAACGAGGACATCCAGCACTCTCCCTTCATGGCTGAAATCACTGCTGCTGTAAACAAGGACTACTACCCTGATAAGGTGAAGGCGTATGGTCCAGGCCTACAGAGCAGTGGTCTTGCAGTGGGGAAACCCACTGAGTTCACTGTCGACGCCAAGCTGGGAGGGAATGCTGCCCTCAACATCCTGGCACAGgatggtGAGGGAACCCCAGTAGATGTTCAGGTGAAGGATAACGGTAATGGAACGTACACCTGCAGTTACACCCCCAAGAAACCCCTCAAACACACCGTCATGGCGTCCTGGGGCGGGGTCAACATACCGGACAGTCCCTTCAGGatgactATCGGGGCAGGCTGCCACCCTAACAAGGTGAAGGTGTCAGGTCCTGGTGTGGCTAAAACAGGGCTGAAGGCATTTGAACCAACATTCTTCACTGTGGACTGTGCTGAGGCGGGTCAAGGTGACATCAGTATCGGTATAAAGTGCTCTCCAGGCGTGGTGGGACCGGCAGAGGCAGACATCGACTTCGACATCATCAGGAACGACAACGACACGTTTACCGTTAAATACACCCCGCCAGGCGCTGGTAGTTACACTATCATGGTGCTGTTTGCTGACCAGACCATCCCCATGACTCCCATCAGGATCAAAGTTGACCCGTCACACGACGCCAGCAAGGTCAAGGCTGAGGGACCTGGACTCAACCGCAGTGGTGTGGAGTTGACCAAGCCAACCCACTTCACAGTAAACACCAAGGCTGCAGGTAAAGCCAAGCTGGACGCTGTTTTCTCCGGCCCGGCTAAAGGAGAGGCTGTTAAGGACTTTGAGATCATTAACAACCATGACAACACTCACACGGTCAAGTACACCCCCATCCAGCAGGGGCCTCTGGGAGTGGCCGTCACCTACGGAGGAGATTCTATTCCCAAGAGCCCCTTCTCCATCCCTGTGGCTCCAAGCCTCGACCTCAGCAAGATACAAGTTGATGGACTGGGAGACAAGATAACAGTGGGTAAGGACCAGGAAGTGACCGTGAAGTCCAAGGGAGCAGGAGGTCAGGGGAAGGTGGGAGCTAAGGTTACAGGGCCCTCTGGGAAACCTGTCACCTGCAAGGTGGAACCGGGGCTTAAACCAGAGACCAGTCAGGTGAAGTTTATCCCTCGAGAGGCGGGGCCATACCAGGTGGAGCTGACCTATGACAGCGCTCCCATCCCAGGATCCCCTTTCAAACCCACCGCCTACCCCCCCACTGATGCCACCAAGGTGAAGTGTTCTGGCCCAGGGTTGGAGCGTGCCAAggtgggagagactggggagtttGTGGTGGACTGTACCAACGCAGGTCCAGCTGAGCTGACCATAGAGATCATCAGTGACAGCGGGACAGAGGCAGAGGTCCACATCCAGGATAATGGAGACGGAACCTACACCATCACCTACATCCCCCTGTACCCCGGCTCCTACACCCTCACCATCCGCTACGGGGGGCAGGATGTACCCAACTTCCCCGCCCGCCTCACAGTGGAGCCGGCCGTCGACGCCAGTGGAATCCGCGTGTTCGGACCGGGAGTGGAGGGCAAAGgcGTGTTCCGCGAGGCGACCACAGACTTCACGGTAGACGCCAGAGCTCTGAACCAGACGGGAGGGAACCACATCAAGACAGTGATCCAGAATCCATCTGGATCCGTTACCGACGCGGTCATCACCGACCGCCGTGACGGCACCTACAGCGTAGAGTACACTCCCTACGAAGAGGGTCCCCACAGTGTAAAGGTGGCGTACGATGAGTCTCCAGTTCCCAAAAGTCCGTTCCGCGTGGCAGTGACAGAGGGTTGTGACCCGGGGCGCGTACGTGCACATGGACCCGGCTTGGACAGTGGCATCACCAACAAAGCCAACAAGTTCACTGTGGAAACCCGtggtGCGGGTACAGGTGGTCTGGGTCTGGCTGTAGAGGGCCCATCCGAGGCTAAGATGTCCTGCACCGACAACAAAGATGGCAGCTGCAGCGTAGAGTACATTCCCTACGAGGCTGGAACGTATAACCTCAACATCACCTACGGAGGACAGCCCATCGCTGGCAGTCCATTCCAGGTTCCTGTCAGTGACACGGTGGACAGTTCTAAGGTTAAGTGCCAGGGGGTGGGGCTTGGAACCAACGTACGtgccaacattccacaggccttCACAGTGGACGCCTCTAAAGCAGGAGTCGCCCCTCTACAAGTCAGAGTACAGGGACCCAAAGGTGTAGTGGAGCCAGCAGAGTTAGTGGATAATGGAGACCAGACTCACACCGTGAACTACATCCCGACCAGAGAGGGACCTTACTCTATCAACGTACTGTATGCTGACCAAGAGATCCCacgcagTCCCTACAAGGTGAAAGTGTTGCCTACCCATGATGCCAGCAAGGTGCGCGCCAGTGGCCCCGGTCTCAACACCACCGGAGTGCCCGCCTCTCTGCCTGTCGAGTTCACCATCGACGCCAAGGATGCAGGAGAGGGGCTGCTCGCCGTGCAGATCACTGACCCTGAGGGGAAGCCTAAGAAGGCCAGTATCCGTGACAACCAGGATGGGACTTACCTGGTGTCGTATGTACCTGACATGACTGGTCGTTACACCATCCTGATAAAGTATGGAGGGGATGAGATCCCTTATTCCCCCTACCGCATCAGGGCTCTACCTACTGGGGACGCCAGCAAATGTACTGTCAcagTGTCAATCGGCGGCCACGGCCTGGgaGCCGGTGTGGGTCCAACCATCCAGATCGGAGAGCAGACTGTCATTACTGTGGATGCAAAGGCTGCTGGGAAAGGAAAGGTGACGTGCAGTGTGTGTACCCCAGAAGGGGTTGAGTTAGATGTAGACGTGGTGGAGAATGAGGATGGAACCTTTGATATCTTCTACACTGCCCCCCAGCCTGGAGATTACTGTATCTGCGTTCGCTTTGGAGGGGAACTCATCCCCAACAGCCCCTTCCTGGTCACGGCATTGGAAGGAGCCCCTTCAGATCAGCTCCTCCAACAGCAACAACTACCACAGTACTACAGTCAACAGCCCTGGGCAACAGACCGGCCAATGGGAATGAATGGTTTGGATGTGGCGGGACTCCGGCCGTTTGACCTGGTTATCCCCTTCACCATCCAAAAAGGAGAgatcacagGCGACGTGCGCATGCCGTCAGGTAAGACAGCCAAGCCGGACATCACAGACAATAAGGACGGGACAGTAACGGTTAAATACGCTCCGACTGAGGCCGGCCTGCACGAGATGGACATCAAATACGACGGGATACACATCCCTGGTAGTCCACTCCAGTTCTATGTGGACTATGTGAACAGTGGGAACGTCAGTGCATACGGACCGGGCCTGATCCACGGGACCGTCAACAAACCTGCCATGTTCACCGTCAACACCAAGGACGCAGGAGAGGGTGGTCTGTCTCTGGCCATCGAGGGTCCTTCTAAAGCTGACATCAGCTGTGTGGATAACCAGGATGGAACGTGCTCTGTGTCCTACCTGCCTGTCCTACCTGGGGACTATAGCATCCTGGTCAAATACAATGACAAACACATCCCTGGCAGCCCCTTCTCAGCCCACATCACAGgtgATGACTCTATGAGGATGTCCCATCTGAAGGTGGGCTCTGCTGCTGACATCCCATTGGACATTGGCGAGCTGGACCTGAGTCAGCTGACAGCCTCTCTGACCACGCCCTCCGGCCGAGAGGAACCCTGCCACCTCAAGATGCTCCGCAACGGACATGTCGGCATCTCGTTTGTTCCCAAGGAGATCGGGGAGCACCTGGTGAACATCAAGAAGAACGGACGCCATATTCCCAGCAGCCCCATCGCCGTGATGATCAGTCAATCGGAGATTGGTGACGCCAGTCGGGTGCGAGTGACTGGCCAGGGCCTCAGTGAGGCCAAAACATTTGAACCTGCTGAGTTCATCATCGACACACGCGAAGCAGGCTATGGGGGTCTGAGTCTGTCCATCGAAGGCCCCAGTAAGGTGGACATTAACACTGAGGACCAGGAGGATGGCACCTGTAAGGTCACCTACTGCCCTACTGAACCAGGAAACTACATCATCAACATCAAGTTCGCCGACCAACACGTACCAGggagtgCGTTCACAGTGAAGGTGACGGGAGAAGGGAGGATGAAGGAGAGCATCACCAGGAAGAAGAGGGCAGCGTCTGTTGCTAACGTGGGCAGCCAGTGTGACCTCAGCCTCAAGATCCCAGAGATCAGCATAGCAGACATGGTGGCCCAGGTGACCAGTCCGTCTGGTCAGGTCCAGGAGGCtgttaaccctgtgtgtgtcTTAACAGAGATCAGCATAGCAGACATGGTGGCCCAGGTGaccagtccatctggtcaggtCCAGGAGGCTGACATCATGGAGGGAGAGAACAACACCTACTGCATCCGCTTTGTTCCCACGGAGACCGGCGTACACACAGTGTGTGTGAAGTATGCGGGCGTGCACGTGCCCGGCAGCCCCTTCCAGTTCACAGTGGGGCCCCTGGGAGAAGGAGGAGCCCACAAGGTCCGCGCTGGGGGGCCCGGGCTGGAGAGAGCAGAGGCTGGAGTACCAGCTGAGTTCAGTATCTGGACGCGGGAGGCAGGTGCAGGGGGTCTCAGCATTGCGGTGGAGGGGCCCAGTAAAGCAGAGATCACCTTCGAGGACCGCAAGGACGGATCCAGTGGTGTATCCTACATGGTCCAGGAGTCAGGAGACTATGAGGTGTCTGTCCGTTTCAACGAGGAGCACATCCCTGACAGTCCCTTCGTGGTTCCTGTGGCGTCGCCCTCTGATGACGCCAGACGACTCACTGTTGCCAGTCTTCAGGAGTCCGGGTTGAAGGTCAATCACCCAGCATCCTTTGCTGTGAGCCTGAACGGAGCGAAGGGACAGATTGACGCTAAAGTCCACAGCCCCTCCGGAGCCCTGGAGGGCTGCTGTGTTACTGAGCTAGACCAAGataagtATGCTGTCCGATTCATTCCCAGAGAGAACGGTCTGTATCTGATCGATGTGAAGTTCAACGGCAGCCACATCCCCGGCAGTCCCTTCAAGATCAGGGTGGGGGAGACGGGCCAGGCTGGAGACCCAGGCATGGTGACCGCATACGGAGCTGGATTAGAGGGAGGAAACACTGGTACAGCCTGTGAGTTCGTGGTTAACACCAGTAAGGCGGGCCCTGGGGCCCTGGCGGTGACTATCGATGGCCCCTCCAAGGTGAAGATGGACTGTGTTGAGTGTCCAGAGGGTTACAAGGTGACCTACACCCCCATGGCTCCAGGAAACTACTTAATCTCCATCAGATACGGAGGTCCTTACCACATCGTAGGATCCCCCTTCAAGGCCAAGATCACTGGCTCCAAGCTGGTCAGTAGCCATAGTAACCACGAGACGTCCAGTGTCATGGTCGACCCCGTGACTCGCCAGGTTAGCTCTTCCCACCAGGGAGCTCCCAGCCAATCGGACGCCAGCTGTGTGACAGCCAAAGGTCTCGGCCTATCAAAGGGCTTTATCGGCCAGAAGAACAACTTCAGCGTCGACTGCAGCAaagcagGTCGTAACATGCTGTTGGTGGGTGTGGACGGGCCCAGGGTTCCCTGTGAGGAGGTACTGGTGAAGCACCTTGGGAACCGTGTCTATAACATCAGCTACCAGCTCAAGGAGAAGGGAGAGTACATCCTGGTAGTGAAGTGGGGAGAACAACACATCCCTGGCAGCCCCTACCACATCACTGTCTAGACCAATCAGATTCGACTCCATTACTGTCTAGAGGCCAATGACAAATCAGAACCCTCCAAACTAGCCCTTTTGTCTTCATAGCAATCAGAGATTACAACTTTCTAAACTCATTCACCATAACCCAAACAATAATGCATAAACACTGAATATTCCTCTtcattcctctcctccccatcactatcatcctcctcccctcacctATCATAATCATTAGTAGTCATATAGAGGGGAAACATGCACCTTTTTATTACTGTAAAATAGCTTAGCAACATGTACCTTCCTTTCCCCACGCAGTGTTTAGCTGTGGGCTAGTGATAGCCTAGCCTAGCGTATGGTAGCATAGTGTATTGGTATAGGGGTTAGCCTACCCTAGCAGAGCATAGTATATTGGTATGAGAATAGCCTAATGCTAGTCCAGTGTGTTCATGATGCTAATTCTAAAGTGTTTaagggaaagtgggataccttgtcagttaagctgctgctactgtgGCTTGGTGTTAGCTCGTCTTAACCATAATAATGAAAGGGCTTATAGGTTAAACTGTTAGAATAGTTTGTTAATAACAAATGGATAGCACGTTAGTGATGCTAGCGTAGCCGGCTCCTATAACTTCACACACACTTGTTTTAGAGGTGCGACTAGCACCACTGCAGCGACTGACCCAGTTAGAACGGCGTCTTACAGCATATTGACTAGCATCAAAGTATTACTAATTATAGTGTGATGTCCATGTCACTAGTAGTATGATTAACTGTAGTGTGGAAGTGATGTCCAGATACTAGTATTGAATAAAAAACTGTCACTGTAATAGCTGTAATATTACTAGCAGTGAATATGAGAAGTGTTGGATGGAGAGATGAGCAAAATGCATAAAGAACAAATGTTGCTTTGTGTTCCTGCTAAGTGTTCTAAACCCCCCTGCTCTTTAGCTTTGTTACGCAGTATTCCAGAATAAAATAACCTTGTCTGTTAAAGGGCTTTAAAGTGTTGTAAAAGACAGTATTTTGATCCACAATAAAGATTGTCTTGAAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1613351 lncRNA downstream 3094 77951227 ~ 77952505 (-) True G1411819
TU1613344 lncRNA downstream 5933 77949451 ~ 77949666 (-) True G1411817
TU1613340 lncRNA downstream 9090 77945584 ~ 77946509 (-) True G1411813
TU1613336 lncRNA downstream 10666 77944245 ~ 77944933 (-) True G1411812
TU1613335 lncRNA downstream 11620 77943748 ~ 77943979 (-) True G1411811
TU1613408 lncRNA upstream 20337 78045314 ~ 78045644 (-) True G1411861
TU1613397 lncRNA upstream 39541 78064518 ~ 78065283 (-) True G1411850
TU1613388 lncRNA upstream 41060 78066037 ~ 78067510 (-) False G1411845
TU1613414 lncRNA upstream 42591 78067568 ~ 78067842 (-) True G1411867
TU1613426 lncRNA upstream 91769 78116746 ~ 78120205 (-) False G1411876
XM_036947838.1 mRNA downstream 372941 77493861 ~ 77582658 (-) True ikbkg
XM_036947839.1 mRNA downstream 373270 77493860 ~ 77582329 (-) False ikbkg
XM_036947837.1 mRNA downstream 378137 77493860 ~ 77577462 (-) False ikbkg
XM_036945807.1 mRNA downstream 810801 77138689 ~ 77144798 (-) True LOC110491186
XM_021567163.2 mRNA downstream 850882 77102080 ~ 77104717 (-) False LOC110492706
XM_036945860.1 mRNA upstream 3230 78028207 ~ 78029944 (-) True LOC118939482
XM_036947855.1 mRNA upstream 46642 78071619 ~ 78096291 (-) False dnase1l1
XM_036947856.1 mRNA upstream 46642 78071619 ~ 78096332 (-) False dnase1l1
XM_036947854.1 mRNA upstream 46642 78071619 ~ 78096348 (-) False dnase1l1
XM_036947853.1 mRNA upstream 46642 78071619 ~ 78096380 (-) True dnase1l1
TU1612750 other downstream 604374 77349553 ~ 77351225 (-) True G1411366
TU1612655 other downstream 789776 77165458 ~ 77165823 (-) True G1411281
TU1612210 other downstream 983480 76961470 ~ 76972119 (-) True G1410911
TU1612028 other downstream 1158488 76796366 ~ 76797111 (-) True G1410776
TU1612024 other downstream 1159719 76795583 ~ 76795880 (-) False G1410776
TU1613409 other upstream 25289 78050266 ~ 78053138 (-) True G1411862
TU1613387 other upstream 31990 78056967 ~ 78067510 (-) False G1411845
TU1613384 other upstream 41060 78066037 ~ 78067510 (-) False G1411845
TU1613385 other upstream 41060 78066037 ~ 78067510 (-) False G1411845
TU1613386 other upstream 41385 78066362 ~ 78067510 (-) False G1411845