RNA id: XM_036947856.1


Basic Information

Item Value
RNA id XM_036947856.1
length 1121
RNA type mRNA
GC content 0.50
exon number 9
gene id dnase1l1
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78071619 ~ 78096380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCAGCGGGGCAGTCTTCTCTTGAACCAGGAAGAAGAAACTTGGCACCAtgtcatcctcttcctccctcctcctcctcctcttcctcctctctctgagcGGGGTGAAGCTGATCTCAGGGTTTAAGATCTGTGCCTTTAACGTCCAAAGCTTCGGAGACTCCAAGTCACGCAACACTGAAGTCATGCACACACTAATACGGatcgTGTCTCGTTGTGATGTGTGCCTGCTACAGGAAGTGagagacactaaacagaaagccATACCGCTGCTGATAACTGAACTGAACAgGTATGACAGCCAGAACCAGTATGATTATGTGGCCAGTGAGCGGCTGGGCAGGACACCTAGCTACCAGGAGcagtatgtgtttgtgttcaggatCGGCTCTGTGACAGTAACAGATCAGTACCAGTATTCTGACATGTTGCCGGGAGACGAGGATGCCTTCTCCAGAGAACCCTTCATCATCCGCCTTCACACCCCCAAGACAGccaTACGGAACTTTGTGTTAGTACCCCAGCACACCACTCCCACCAATGCTACTAAAGAGATTGATGCCCTCTACGATGTCTTCCTGGATGTCAAGAAGAAATGGAAGACAGAGatggtgaTGTTCCTAGGGGATTTTAACGCTGACTGTGGCTACGTGGCCAAGAAGAACTGGCAGCATGTACGTCTCTATAGTAACCAGGCCTTCCTGTGGCTAATAGGGCACACAGAGGACACCACCGTTAGACAAACCACCACCTGTGCCTACGacaggaTCGTGGTCCACGGGGAGGCATTTGAAAAAGCCATCGTGCCCCAGTCTGCACAACCTTTCAACTTCGCCAAAGAATACGGCCTCACAGAGGAACAGGCGCTGGATGTCAGTGACCACTACCCAGTGGAGGTTGAGTTGAAGGCGGGGTCAGAACATTTGGGAGGCCACACCCTTCTGATCCTCCTCATGGCCTTCTTCATCTCCACCTGAACCTGTGGCCACGTTCCAGGCCGACTATACTgcattgcatcaaccaatggttgtgtcCCATGTCAAGCATCAGATGGCTATACTGTATCATATGatgtgtactgaacaaaaatataaacgccacATAAAACCATTtcaaacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1613414 lncRNA downstream 3777 78067568 ~ 78067842 (-) True G1411867
TU1613388 lncRNA downstream 4109 78066037 ~ 78067510 (-) False G1411845
TU1613397 lncRNA downstream 6336 78064518 ~ 78065283 (-) True G1411850
TU1613408 lncRNA downstream 25975 78045314 ~ 78045644 (-) True G1411861
TU1613351 lncRNA downstream 119114 77951227 ~ 77952505 (-) True G1411819
TU1613426 lncRNA upstream 20414 78116746 ~ 78120205 (-) False G1411876
TU1613427 lncRNA upstream 20414 78116746 ~ 78118921 (-) True G1411876
TU1613447 lncRNA upstream 50987 78147319 ~ 78147782 (-) True G1411896
TU1613458 lncRNA upstream 72145 78168477 ~ 78172534 (-) True G1411906
TU1613462 lncRNA upstream 82473 78178805 ~ 78179268 (-) True G1411909
XM_036945860.1 mRNA downstream 41675 78028207 ~ 78029944 (-) True LOC118939482
XM_036947851.1 mRNA downstream 46640 77956638 ~ 78024979 (-) True flna
XM_036947847.1 mRNA downstream 46642 77955599 ~ 78024977 (-) False flna
XM_036947860.1 mRNA upstream 8248 78104580 ~ 78137424 (-) True LOC110512774
XM_021567185.2 mRNA upstream 71633 78167965 ~ 78193667 (-) True ndnl2
XR_002469070.2 mRNA upstream 105553 78201885 ~ 78203768 (-) True LOC110492727
XM_036947862.1 mRNA upstream 109807 78206139 ~ 78314948 (-) True LOC110492720
XM_036947863.1 mRNA upstream 227745 78324077 ~ 78381586 (-) True LOC110492722
TU1613387 other downstream 4109 78056967 ~ 78067510 (-) False G1411845
TU1613704 other upstream 219985 78316317 ~ 78318998 (-) False G1412091
TU1613705 other upstream 219985 78316317 ~ 78318998 (-) True G1412091
TU1613851 other upstream 407959 78504291 ~ 78511632 (-) False G1412203

Expression Profile