RNA id: XM_036947862.1



Basic Information


Item Value
RNA id XM_036947862.1
length 7936
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110492720
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78206139 ~ 78314948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATAACCTATCGGCACTATGGCCACTTCCCCTGGCTTCATCACAGCCCTgttcatggctagaagggatacagcttttgtcaaattaacgttaaaaatatacattttgttaATTTTCGTTAACCTTTACTCTTTTCCAAAACtaaacctaattctcctaacctgctacgaaaagtcgtTCTGACAAAAGCTGTGTCCATCTAGTCAAAAACCCTCCGCTTCCCTCCCACTTGTGTTGGTCCGTGAGGAAGTCGCAAGATGGCTGACAGCGCTCGGAAGTATGCTCCCTTCCTCCACATGAAGTCGTGAGTTTGGAAGTATGCTCCCTTCCTCCACATGAAGTCGTGAGTTTGGAAGTAAGCGAGGGAGTTTGTATCAGGCGTTTGTTTTTATTTAAGTTATTGTATTTCTCCAAACAGCCCATTTCATTCCTGTGGACCCAGTTAGCTAAAAGCTCCTGTAGATGGCTAACGGTATCAACATATACATGACCTAGTACATTACATTAGCTAGCACTTGCAATTCGAACTAGTCTAACAAATATTTGCACTGTCAGGTTAAGTATTCCGCTGTAGTCATGTTCACTAACTAGATCATTCGCAGAGGGTTTCTTCGTGTGAACCAGGATTATAACTTTGGAGTTGGAAGCATCGCCCAAATCATAACTACAGATGGCCAGTCAGCTGCCAGTCACATTTTCAGGTGTTAACTAGTTAAGGACTAGTCAACGAGAAACTTCAGTTGTTTTGCTGGCAGTTTACCAAAATACTACCAGGGATGGACACACACGACCAAATGTAGCAACGTTAGCCAGGTTGCTAACCAGCTAGGCAGGGTTGGGGGGCGCAACTAGCTACCGGCGACAACAGCCGTGTAGTCAGTCAGTTACTGTCAGAGACGAGTTAGTCAGCCGCCCGTTTCCAGTTAGCTACCAGATTGACACCAACCGAGCCTTCCCCCGGACAGACCCACCGGCTCAACAACACCGGGATGGGCGTGCAGGGCTTCCAGGAGTATCTGGAGAAACGGTGTCCCGGGGCTGCCATCCCCGTGGACCTCCTCAAACTAGGCCGTACTGCGGGACGCCAGCACCACCACCCCGGCCCTCTGCCCCTTCCACCACCGGCCCGGATACTCATCGATGCTGACTCCGGTCTGCAGCGTCTGTACGGCGGCTACCAGACGGACTGGGTGTGCGGCGGGGAGTGGAACGCCATGCTGGGATACCTGTCCGCTCTGTCCCAGGCCTGTCTGTACCAGGGCGGGCTGGAGCTGGTCGTGGTGTTCAACGGGACCCTGGGGAAGGAGCGGTGGCCGGAGTGGGCACGCCGGGCCCAGGGGCAACGCCAGACGGCCCAGCTCATCGTTAACCACGTCGGCAGTAAGGCCACTCCGCCTCCCCGCGCCTGGTTCCTGCCTCCTGCCTGCCTCAGTCACTGTGTCCGCCTCGCCATGTTCCGCTTCAGAGTGCGGGTTGTCCAGACGTTGGAGGACCACCACCAGGAGGTGCTGTCCCTCTACAGGGACTTTGGTTTCTGCGGTCTGATCGCCCAGGACTCAGAGTTTGCTCTCTGCAACGTGCCCGCCTACTTCTCCTCGCATGCCCTCAAACTGTCCTGGAACGGCAAGAACCTGACCACCCACCAATACCTGCTCTCTGAAGCAGCCAGACAGCTGGGTCTGAAGACACAACAACTGCCCTGCTTCGCTGCTCTGCTGGGGAACCATATTCTCCCTGATGAGGACCTGGCTGCCTTCCACTGGAGCCTTTTAGGACCAGAACACCCCCTGGCCTCACTCAAGGTGCGTGCCCACCAGTTGGTGCTGCCTCCCTGTGAGGTGGTTATCAAGGCGGTGTCTGAGTACGTCTCCTCCTTTAAAGACCTGGGGAACCTCGACGCTGTTGCCAGGGACGTCTTCAACCAATCCCAGTCTCGTATGGAGGataaggtggaacgttttaagaaGGCTGTGGAGTATTTCTCATCTGCCTCTAAACCACGCCCACTCTCCATGGGACCCTCCCCCTACCTTTGGTTTGGTCCGGCTCCTTTTGGCAGTCCTCCTGGCCACATGGGGGCAATGCAGCCTGGAAAGCACCAGGGGGTAAATCCACCCTATCCGAATGCTCCGTGTGGACCAGGCCACGCCTCTCTGTTCCAGAACCTGGCCCCCCTGCCGGACTGCAATGATTCGCTGTCTGGGACAATGGGCTACATGGATTGGTCGGCTCCATATGACCAGGGAGGAAGTAGATTAACGAATCACCACACGTCCGCTCCCTCTGGCCCCTCCCACTCGCCATCGTCTTCCTCCGATGGAGACGAACCAAACGACAGCAGCCACCATCTGACAGACAAGTCCTCCGGGTGGGACGATCCGTCCGGCCGGGGGAGTGGAGGGGATGGTTCCCACGGTACCGGGAGCGGGTCCAACATTCCATCGCTGTTGTCAATGGCGACGCGGAGTCACATGGACATAACCACGCCCCCTCTGCCTCAAGTCAGCGCTGAGGTGTTGAGAGTAGCAGAACACAGACATCGCAGAGGACTAATGTATCCAGAGATATACCACATACTGACCAAGggagagATGAAGATGGCGGTGTGTATAGAAGATGATTGTAACAGTGAACTGCCTCCAGCCTCTCTGCTGTTCAGAGCAGCCAGACAGTACAGCTATGGGGTCCTCTTCAGCCTAGCTGAAACACACCGACACCTCGAGAGACTCGCCATGCGCAACAGAGGACCCCTCGAAGTTCCTCCAGTGATAGTGAAGGAGTGGTCCAGTGGGAAGTCGAAGTCGGCCCTGACCCCGGAGCTGGTTCCAGCGCTGTGCTTCAGAGAGTGGACCTGTCCTAACCTGCGGAGGCTGTGGCTTGGTAGAGCCAGTGAAGATCGCTCCCGGAGGACCAGAGCTTTCCTAGCCTGTCTGCGCTCTGACTGTCCTGCCTTACTCAACCCTGCTCAGGTCCCACAACACCTTCTGCTCATGTGCTGCGTGCTCAGgtATATGATGCAGTGGCCAGGTGGTGGTATTCTACAGAGACATGAGTTAGATGCCTTCCTGGCCCAGGCAGTCTCTAACCAGCTCTACGAACCAGACCAGCTACAGGAACTGAAGGTAGAGAAGGTAGACAGTCGGGGGGTCCAGCTGGCGTCTCTCTTCATGGCGGGCGTGGACACTGCTCTGTTGGTCAATGACGTGTGTGGTCAGCCGTTACCATGGGAACACTGCTGCCCCTGGGGCTTCTTCGACGGGAAACTCTTCCAGACCAAACTGGCCCGCGCCGGCCGAGACCGACTGGCCCTGTTCGACATGTGTGAAGGACAGGAGGAGCTGGTGTCTCGTGTGGAGAAGATGCGTCAGGCCATTCTAGACGGCATCAACTTTACtcgtcctcctccccctctcccccctctttccttcctccGCCCTCCCCCcttctaccccccaccccccctctaccccccccggCCCATGGGTAACATGCCCCCCCACTACCAccctcatcatcctcaccaccacCCAAATGATCCTCACCACCAccctcatcatcctcaccaccacCCAGCCCAGCATCGACCCAGAGGCTTCCCAGGTCTGCAGTCGATCCCCCCTCAGGGAGGGAAGTTGGAGATAGCCGGCATGGTGGTGGGCCAGTGGTCCGGGAACAAACCACTGCGTGGCAGAGGGGGGCTCAACATGCAGGTGGTGTCGGTCGGAGCAGGGAGAGGaaGGGGTAAGGACATCCCAGCGAAAGCAGGACGAGGAGTTAAAAAGacacattccccctcctccaccagccccaccaAGCCTGAGGAGGAGGAGCCTAACTCAGGGGCCGTGACCCAGCAGCTGAATGGCAGCCCTGCAGCCTCCACTATTGGCCAGCCTCTGGATCTGCCCCCACTGGCCCATCCAATCCCGTGTGCCTTAGCAAGCAGAGACAACCAAACAGAGGAGGCCCCCTGTTGCCTTGACGACTGTCCTTCAGACGTTCCGAAGGAGGCGTGACGAGGCTTTCCCAGAATGCACCAGGGTGTTCTGAAAAAGCTGTCTGTGTTTCACTGCCCCTTGATTTTGTCATGTAGTTTTATTTTATCTTAACGATCAGAGGTTTTTCTCCATGAGTCCGTATGTATGTAAGCCCCTGCCTACCTAAAGCACCGCCCCCATGGCCCGTCGCTATAGTAACCCCAGCCCACTGTCTCATGATGTTCTGATGGTCCCTCCCTACTGTTAATATTCCTACCGGGATCCTTGCGGTTAGACTTGAACTGCGGTGTTTAGTAGTGTGTTTAGATACACTAACATCGACACTACCACACACTGTTGGCTAGGTGCCTGGGTTTGGTTGCCGGGTGTGTCGGTTGTTGCCATAGGGACCTCATGGTGAGCTCAGAGTTCCAGGAGTGTTGGACTCTAGAAGTGTCAGAGGAGGAATAGCGAAAGAGGAGGATGACGAACGAATGAGTGCAGTGTTTGTGTGCTAAATAAGCCCAGTTTACCACCAACAATGATTTATTAGTGTTAGCCGCGCCACTAACCACCCAGAGAGCGTGTTTGCATTGCTATAACCCTTCAGTAGCATTTGCACCGCCGCACCGCTAATGCATTAGCATGCTAACGTAGCCCACACCTTGAATAACATTAGCACTTGCCCTAATATGTTATCATGCTAAGTTAGCCTAGCCCAGCTGTATTTAGACCCCCTGACCACAGATGTAATGTAACCTGACGCTCCAACGTATGGAAGCTCTTACCCCTATATTAGATTATATCCCCTATGCTCTGATTGTATATCCCAACAGAGAGCACTAATGTTGGATTCATTGATTTAATATTGATTATTATTGACCAGACCCCTAGACAGTTGGTCTGAGAGAGTTCCCTTGCGACCTAGGAAATCACTTTGATCATTGACCTCAAGGTCTATTTTAACATGGCCTTTGTGTTCTGCAAACGAGACCTGTTTGAATGTGATCAGAGTAGGGCTGCACAATTCATCCAAACTGCAATATTGACATGTGCAATATCCATATCGCAATATTTTGCAACCCCACTCAGCCGTGTGTACGGTCCGTTATTATAGTCGACTCTGTCGTCCCTCTCCTCTTGCGGCTGATTCCTACAACTCAAGCAGCACAGTTCCTCTTCTGTTAGATTCACTAGAAGCTTCCATGCTGTTCTGTTAGGTCAAATGCAGTCGGCACATTGTTCCAAACAAGAATGGTGCTGCTTTCCACTtagcttcttaatataaatcattATATTTCTCTGATTCCAACTGTGTTTTGATCGATCACAAGTCAAATTGTAATATTTGTTCAAAGTAAATAAAATGTGGCAATATGATGCAGCCCTAGAACGGCGTGGTCTTCAGAAGAAGCACGTTTAGTTTAGGAATCCTCTAGCAGGTCAAAACATTCACGCGATCAGAGACAATATGATGCAGCCCTAGAACGGCGTGGTCTTCAGAAGAAGCACGTTTAGTTTTAAAAGGAATCCTCTAGCAGGTCAAAACATTCACGCGATCAGAGATGGAGGACATCTTTGTATCTGTACCGTTATTGCATCTATGACAGTATGGGCAGCTCTATAGAGCCTAGCTTCATTTTAAAGTAGTCTATTTTCTTCACAGTTAGCTAATCCCTCCCAGTTTGACATGACTTCAACAGGGTCActaggagggatcagccaatgaagttgggAGGCCCACACAGTCGACTACATTAGAATGGTGGAAGcgctcaatggcgctgcccaggCTAATACGGCCTGTTGGCCagtagaggcctctatcattctctatgggccAAGTATGGTGCCACGTCAGAGGACGGGAGGGTCAGGGCTTAAAGGTCAGAGTGCTGACGCTACCAAGCTCCTCTTCTGACTGGCACCTTGTCTAAATGAACCCaaggctgcatctgaaatggcattcCCTGCGTAGTGCATCAGAAGCAGTGCCTTTAGAGACAAGACCTGATGAAGTCCCAAAGCATAGACCCACACTAGCCTTGTCAGCTGGCTGGCCAATCAGGACAGGCCTGGTAGCACCGCCTGGTGATTGGTTAGCAGTTTCCACTGCGATAGCCCAGCCTTCTAAGCTCTTTATCTAACAGGAAGCACTTCCCCCAAACCACTTAGCCAATCAGCAGGGGTTTAAGGTGAGAACACTTGCATGTTCCGCCCACAATCTAAAGATCCTAAATAGTTTTAATGTTAAACTCTTTATGTTGTCATCATTATAGTAGAGGATAAAGTATCATTTTAATAGGTCTGCTCTGAGTATTGACTTGTTTTAATGTTAGTAGAAGACTACAGAGAGATAGCAGAGAGGAATCAGTTTTAATGTTAGTAGGAGACTACAGAGAGATAGCAGAGAGGAATCAGTTTTAATGTTAGGAGACTACAGAGAGATAGCAGAGAGGAATCAGTTTTAATGTTAGTAGGAGACTACAGAGAGATAGCAGAGAGGAATCAGTTTTAATGTTAGTAGGAGActacagagagaaagaagagaggaatcAGTTTTAATGTTAGTAGGAGACTACAGAGAGATAGCAGAGAGGAATTAGTTTTAATGTTAGTAGGAGACTACAGAGAGATAGCAGAGAGGAATCAGTTTTAATGTTAGTAGGAGACtacagagagatagaagagaggaaTCAGTTGTAATGTTAGTAGGAGACtacagagagatagaagagaggaaTCAGTTTTAATGTTAGTAGGAGACTACAGAGATAGCAGAGAGGAATCAGTTTTAATGTTAGTAGGAGACtacagagagatagaagagaggaaTCAGTTTTAATGTTAGTAGGAGACtacagagagatagaagagaggaaTCAGTTTTAATGTTAGTAGGAGACTACAGAGAGATAGCAGAGAGGAATTAGTTTTAATGTTAGTAGGAGACTACAGAGAGATAGCAGGGACTAACCTCTACAGGGCTGTCAGACAATAGTAACCGTGTTGGACTAACCTCTACAGGGCTGTAGTTGACACAAACAGAAAAGGTCTGGCTGCTAAGTAGTCCAATTGCAGGCCAAACTACCGTAGTAGAATGGAAATAACCCCCGGAGAGCGCACAGTTGCCAGAACAACCGTAACATCTGAATAGAGACAGCACTTCAACCCACATAGGTTTGGATAGAGACAGCACTTCAACCCACATGGGTTTGGATAGAGACAGCACTTCAACCCACATGGGTTTGGATAGAGACAGCACTTCAACCCACATGGGTTTGGATAGAGACAGCACTTCAACCCACATGGGTTTGGATAGAGACAGCACTTCAACCCACATGGGTTTGGATAGAGACAGCACTTCAACCCACATGGGTTTGAATAGAGACAGCACTTCAACCCACATGGGTTTGGATTTCTGCGGCTCAtgactgtgttgtgggactgtttACAAGCAAATAGAGAGTTTCGAGATTAATTCCACATCAAGTATTTGGAACAACAATCTTTTAGGGATATCTAGCAGACAGAGTTGAACTGGTCATATAATACCCAGCATGACTAGACGACTACGactcatacatacatatacagtataatactttaacctttaacctttcatTACTGTAGTACAATAAAACGGACCACTGCAGGTCATGAGTATGGCTCTTCAGCCAGGAGGAGTGGTGAGCCTATTTATGTCACTCCACTATCTGACCAAATTACACACGACCCTGTCGACTCGTTCCTAACGATACttactcatatatacacacagtagtTGTTAACAgcactctgtgtgtttgtgctgaAGTGATGTTAAGTTGCTGTTCCTCGTCAGTTTCTGTCTGTGGGTGAAGCAGAGAGACTTGGTAACTCTCTACTGTTGTACCGAGCTGCAGTCTGACACACAGCCCTCTCCACTCATAACAATACTTTCACGCGCACATTGTCATA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1613404 lncRNA downstream 10502 78194864 ~ 78195637 (-) True G1411857
TU1613462 lncRNA downstream 26871 78178805 ~ 78179268 (-) True G1411909
TU1613458 lncRNA downstream 33605 78168477 ~ 78172534 (-) True G1411906
TU1613447 lncRNA downstream 58357 78147319 ~ 78147782 (-) True G1411896
TU1613427 lncRNA downstream 87218 78116746 ~ 78118921 (-) True G1411876
TU1613770 lncRNA upstream 42455 78357403 ~ 78361301 (-) True G1412145
TU1613771 lncRNA upstream 43552 78358500 ~ 78358901 (-) True G1412146
TU1613808 lncRNA upstream 137395 78452343 ~ 78453268 (-) True G1412169
TU1613811 lncRNA upstream 138524 78453472 ~ 78454261 (-) True fkbpl
TU1613833 lncRNA upstream 141496 78456444 ~ 78456887 (-) True G1412193
XR_002469070.2 mRNA downstream 2371 78201885 ~ 78203768 (-) True LOC110492727
XM_021567185.2 mRNA downstream 12472 78167965 ~ 78193667 (-) True ndnl2
XM_036947860.1 mRNA downstream 68715 78104580 ~ 78137424 (-) True LOC110512774
XM_036947853.1 mRNA downstream 109759 78071619 ~ 78096380 (-) True dnase1l1
XM_036947854.1 mRNA downstream 109791 78071619 ~ 78096348 (-) False dnase1l1
XM_036947863.1 mRNA upstream 9129 78324077 ~ 78381586 (-) True LOC110492722
XM_021567181.2 mRNA upstream 89222 78404170 ~ 78414670 (-) True ccdc115
trnae-uuc-7 mRNA upstream 103870 78418818 ~ 78418889 (-) True trnae-uuc-7
trnan-guu-13 mRNA upstream 107030 78421978 ~ 78422051 (-) True trnan-guu-13
XM_036947864.1 mRNA upstream 126683 78441631 ~ 78450333 (-) False fkbpl
TU1613387 other downstream 138629 78056967 ~ 78067510 (-) False G1411845
TU1613704 other upstream 1369 78316317 ~ 78318998 (-) False G1412091
TU1613705 other upstream 1369 78316317 ~ 78318998 (-) True G1412091
TU1613851 other upstream 189343 78504291 ~ 78511632 (-) False G1412203

Expression Profile


XM_036947862.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XM_036947862.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036947862.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.