RNA id: TU1613811


Basic Information

Item Value
RNA id TU1613811
length 790
lncRNA type sense_over
GC content 0.43
exon number 1
gene id fkbpl
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78441631 ~ 78454461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTGATCCGTTGAAGTCGCACATAGCCGAAATACCGTTTGTCTGCAGGTAGGAATAAGTTAGATAGCTGTTCATCTTCTCATGAAATGTAGTATGTTTTACATGCGTTTTTACTTTATGCACATGTTTTACTTTCGCAATGTTCATTAACGCgttatagctagctaactggcGAAATGGTTAATGCTATCTGGAGTCCTTGGGACGGCCCTACCCTAAATCCTCcccataacccttaccctaaatCCTCCCCTAACTCCTCAATTTAACCCCTACCCATTTTAAATGTACGCTTCAATGTGTTAGCGACGTCCAAAGGACCCCGGATTGCATGAGTCCTGGCTAGAGCTAACAGGCTGGTGAAAGAGGGTCGGGCTGTCTGGCAGCTGAGGAGCGCTCTACTCCGTCCCACAGACCCGCTCTCTGCAGGCGAAACCAGGGGTTCAACCAGGAGCCCCAGCGCGACATAATTACTAGCTAGTTAGCACACAATGACAAGTTTCTTGAGCCAACTAAAAAATGGaacaaaaaatacacacacattgaGTTGTTGCtaccaaaaaagtattaatacCCATTAATGTGGGTATTAATCTTGTTCATTCCCAGCGCGCATTTCCACCCTTACGAAAAAAAGATTAATCAGAGTGTAGTAAACTGCAAATACAGAGTCCATAATACCTTTTTCTATTTTACTGCCGTAATTGTACAGTGTCACTGCAGTTATTATGCCattactgcgtccaaaataccacagttgactgcagttTGAAAGCTGCAATCTTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1613808 lncRNA downstream 204 78452343 ~ 78453268 (-) True G1412169
TU1613770 lncRNA downstream 92171 78357403 ~ 78361301 (-) True G1412145
TU1613771 lncRNA downstream 94571 78358500 ~ 78358901 (-) True G1412146
TU1613731 lncRNA downstream 179395 78273455 ~ 78274077 (-) True G1412115
TU1613726 lncRNA downstream 189067 78263982 ~ 78264405 (-) True G1412110
TU1613833 lncRNA upstream 2183 78456444 ~ 78456887 (-) True G1412193
TU1613842 lncRNA upstream 29216 78483477 ~ 78483683 (-) True G1412200
TU1613844 lncRNA upstream 32500 78486761 ~ 78486961 (-) True G1412202
TU1613803 lncRNA upstream 34481 78488742 ~ 78501434 (-) False G1412166
TU1613805 lncRNA upstream 34481 78488742 ~ 78489472 (-) True G1412166
XM_036947864.1 mRNA downstream 3139 78441631 ~ 78450333 (-) False fkbpl
trnan-guu-13 mRNA downstream 31421 78421978 ~ 78422051 (-) True trnan-guu-13
trnae-uuc-7 mRNA downstream 34583 78418818 ~ 78418889 (-) True trnae-uuc-7
XM_021567181.2 mRNA downstream 38802 78404170 ~ 78414670 (-) True ccdc115
XM_036947863.1 mRNA downstream 71886 78324077 ~ 78381586 (-) True LOC110492722
TU1613704 other downstream 134474 78316317 ~ 78318998 (-) False G1412091
TU1613705 other downstream 134474 78316317 ~ 78318998 (-) True G1412091
TU1613385 other downstream 385962 78066037 ~ 78067510 (-) False G1411845
TU1613851 other upstream 50030 78504291 ~ 78511632 (-) False G1412203

Expression Profile

TU1613811 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU1613811 Expression in each Bioproject

Bar chart with 19 bars.
TU1613811 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.