RNA id: TU1521866


Basic Information

Item Value
RNA id TU1521866
length 303
RNA type TUCP
GC content 0.50
exon number 2
gene id G1331652
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 1438787 ~ 1439125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcatccaccgccatcacctcatgtttcagcatgataatgaacagccccatgtcgcaaggatctgtacacaattcctggaagctgaaagtggcccagttcttccatggcctgcgtactcaccagacatgtcacccattgagcatgtttgggatgctctggatcgccgtattccagttcccaccaatatccagcagtTTCACACAGCCaatgaagaggagtggaacaacattccacaggccaccaatcaccagcctgatcaactctatgtgaagagatactgactggttttctgatccacgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1521862 lncRNA upstream 25240 1412989 ~ 1413547 (+) True G1331648
TU1521836 lncRNA upstream 78099 1360400 ~ 1360688 (+) True G1331633
TU1521829 lncRNA upstream 100603 1336426 ~ 1338184 (+) True G1331627
TU1521821 lncRNA upstream 111631 1326337 ~ 1327156 (+) True G1331623
TU1521820 lncRNA upstream 112996 1325484 ~ 1325791 (+) True G1331622
TU1521876 lncRNA downstream 27463 1466588 ~ 1467883 (+) True G1331662
TU1521851 lncRNA downstream 52670 1491795 ~ 1494144 (+) False G1331639
TU1521852 lncRNA downstream 53213 1492338 ~ 1494144 (+) True G1331639
TU1521892 lncRNA downstream 64216 1503341 ~ 1503549 (+) True G1331676
TU1521893 lncRNA downstream 64453 1503578 ~ 1503808 (+) True G1331677
XR_005036408.1 mRNA upstream 13469 1424306 ~ 1425318 (+) True LOC118939493
XM_036945912.1 mRNA upstream 198873 1158440 ~ 1239914 (+) True nid1a
XM_036945913.1 mRNA upstream 212605 1158437 ~ 1226182 (+) False nid1a
XR_005036403.1 mRNA upstream 351412 1041950 ~ 1087375 (+) False egln1a
XR_005036402.1 mRNA upstream 351413 1041950 ~ 1087374 (+) False egln1a
XM_036945921.1 mRNA downstream 62319 1501444 ~ 1516250 (+) True LOC110491205
XR_005036409.1 mRNA downstream 83131 1522256 ~ 1525409 (+) True LOC110491206
XM_036945922.1 mRNA downstream 89973 1529098 ~ 1556106 (+) False b3galnt2
XR_005036410.1 mRNA downstream 89973 1529098 ~ 1556106 (+) False b3galnt2
XM_036945924.1 mRNA downstream 117342 1556467 ~ 1558277 (+) False LOC118939494
TU1520934 other upstream 1015513 403730 ~ 423274 (+) True LOC110491220
TU1520947 other upstream 1097711 340076 ~ 341076 (+) True G1330834
TU1520792 other upstream 1110563 319873 ~ 328224 (+) True G1330718
TU1520738 other upstream 1247992 187717 ~ 190795 (+) True G1330676
TU1520593 other upstream 1402750 33661 ~ 36037 (+) True G1330556
TU1522652 other downstream 490199 1929324 ~ 1930473 (+) True G1332260
TU1522653 other downstream 491629 1930754 ~ 1931132 (+) True G1332261
TU1522971 other downstream 856731 2295856 ~ 2309567 (+) True heatr5b
TU1523176 other downstream 1492095 2931220 ~ 2939940 (+) True LOC110491239
TU1523191 other downstream 1533683 2972808 ~ 2973800 (+) True G1332701

Expression Profile