RNA id: TU1524854


Basic Information

Item Value
RNA id TU1524854
length 911
RNA type TUCP
GC content 0.45
exon number 2
gene id G1333963
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 4339838 ~ 4341823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctcttagagactcaaccagagaagactcacagctcttagcaacttactcagaaagactcacagctgtaatcgctgccaaaagtgattctaacatgtattgactcaggggtgtgaatacttatctaaattagatatttctgtatttaattttcaaaaaatatgtttttatggggtatcgtgtgtaaatgggtgagaaGAATTCTATATTTAATCCaatttaattcaggctgtaacataacaaaatgtggaataagtcaaggggtgtgaataccttctgactggttgttttgtctgattcttgaagaatagaaatgcctcatcaacaagctgtaataaaaataaatgtgaaaaaaaacTGCATGTGCAAAAACAAGAACCTAAGCCAACCTCTGACTACATGTGTACGTAGGGTCTTCTTGATGACCTGTCGATATACAGGTGTTTCAATATGTCATGTTTTCAGTACTGAAGCTGCAGGTATATAACttgaccccaccaccaccatcaccatcaccaccaccatcaccaccaccaccaccaccatcaccaccatcactaccaacaacatcaccaccaccatcaccaccaccaccatcactaccaacaacatcaccaccaccatcaccaccaccaccatcactaccaacaacatcaccaccatcaccaccaccatcaccaccatcaccaccaccaccatcaccaccaccaccactaccaacgacatcaccaccatcaccaccatcaccaccaccaccaccatcaccaccaccaccatcaccaccaccatcaccaccaccaccactaccaacaacatcaccaccatcaccaccaccaccaccaccatcaccaccaccaccatcaccaccatcaccaccaccatcaccaccaccaccaccatcaccaccaccac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1524843 lncRNA upstream 985 4338142 ~ 4338853 (+) True G1333960
TU1524846 lncRNA upstream 1824 4337752 ~ 4338014 (+) True G1333962
TU1524845 lncRNA upstream 2472 4324988 ~ 4337366 (+) True tasp1
TU1524890 lncRNA upstream 16409 4322130 ~ 4323429 (+) False G1333993
TU1524892 lncRNA upstream 16409 4322130 ~ 4323429 (+) True G1333993
TU1524896 lncRNA downstream 2870 4343738 ~ 4343941 (+) True G1333997
TU1524902 lncRNA downstream 11070 4351938 ~ 4352285 (+) False G1334002
TU1524901 lncRNA downstream 11136 4352004 ~ 4352285 (+) True G1334002
TU1524903 lncRNA downstream 18345 4359213 ~ 4359811 (+) True G1334003
TU1524905 lncRNA downstream 20530 4361398 ~ 4361758 (+) True G1334005
XM_036945982.1 mRNA upstream 2422 4244998 ~ 4337416 (+) False tasp1
XM_036945984.1 mRNA upstream 2422 4244998 ~ 4337416 (+) False tasp1
XM_036945983.1 mRNA upstream 2422 4245337 ~ 4337416 (+) False tasp1
XM_036945981.1 mRNA upstream 110460 4134417 ~ 4229378 (+) True sptlc3
XM_036945980.1 mRNA upstream 437640 3866484 ~ 3902198 (+) True btbd3b
XM_036945991.1 mRNA downstream 299330 4640198 ~ 4973348 (+) False LOC110491218
XM_036945992.1 mRNA downstream 566894 4907762 ~ 4973348 (+) False LOC110491218
XM_021564570.2 mRNA downstream 634652 4975520 ~ 4978736 (+) True LOC110491219
trnaa-ugc-125 mRNA downstream 764174 5105042 ~ 5105117 (+) True trnaa-ugc-125
XM_036946001.1 mRNA downstream 815022 5155890 ~ 5196581 (+) True LOC110491235
TU1523349 other upstream 1108431 3230199 ~ 3231407 (+) False G1332826
TU1523350 other upstream 1108824 3230199 ~ 3231014 (+) True G1332826
TU1523257 other upstream 1142587 3065318 ~ 3197251 (+) False LOC110492796
TU1523191 other upstream 1366038 2972808 ~ 2973800 (+) True G1332701
TU1523176 other upstream 1399898 2931220 ~ 2939940 (+) True LOC110491239
TU1525057 other downstream 393921 4734789 ~ 4937679 (+) True LOC110491218
TU1525602 other downstream 1179072 5519940 ~ 5521230 (+) True G1334530
TU1525676 other downstream 1362967 5703835 ~ 5704946 (+) True G1334592
TU1527127 other downstream 2250108 6590976 ~ 6591915 (+) True G1335704
TU1527209 other downstream 2423444 6764312 ~ 6768586 (+) False G1335763

Expression Profile