RNA id: TU1526932


Basic Information

Item Value
RNA id TU1526932
length 316
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G1335553
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6247824 ~ 6249920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcaggtagactagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagcgttgggccagtaaccgaaaggttgctggatcgaatccctgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaagcagtgttcctaggccagttaacccactgttcctagaccagttaacccactgttcctaggccagttaacctactgttcctaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1526817 lncRNA upstream 1738 5997729 ~ 6246304 (+) False G1335468
TU1526926 lncRNA upstream 13350 6234071 ~ 6234692 (+) True G1335548
TU1526922 lncRNA upstream 16526 6228317 ~ 6231516 (+) True G1335546
TU1526915 lncRNA upstream 31230 6212046 ~ 6216812 (+) True LOC118939486
TU1526902 lncRNA upstream 135338 6111862 ~ 6112704 (+) True G1335530
TU1526956 lncRNA downstream 14662 6264154 ~ 6315330 (+) True G1335567
TU1526960 lncRNA downstream 75705 6325197 ~ 6325947 (+) True G1335571
TU1526946 lncRNA downstream 84951 6334443 ~ 6382556 (+) True LOC110491273
TU1526994 lncRNA downstream 119760 6369252 ~ 6369716 (+) True G1335604
TU1527002 lncRNA downstream 130256 6379748 ~ 6380636 (+) True G1335609
XM_036945864.1 mRNA upstream 31220 6123627 ~ 6216822 (+) False LOC118939486
XM_036945849.1 mRNA upstream 575936 5658729 ~ 5672106 (+) False ly6pge
XM_036945848.1 mRNA upstream 575936 5658730 ~ 5672106 (+) True ly6pge
XM_036946029.1 mRNA upstream 595171 5598869 ~ 5652871 (+) False tacc2
XM_036946039.1 mRNA downstream 3191 6252683 ~ 6289144 (+) False slc29a3
XM_036946041.1 mRNA downstream 3191 6252683 ~ 6289144 (+) True slc29a3
XM_036945865.1 mRNA downstream 83848 6333340 ~ 6357849 (+) True LOC110491277
XM_021564617.2 mRNA downstream 111096 6360588 ~ 6382556 (+) False LOC110491273
XM_021564618.2 mRNA downstream 111096 6360588 ~ 6382556 (+) False LOC110491273
TU1525676 other upstream 543096 5703835 ~ 5704946 (+) True G1334592
TU1525602 other upstream 726812 5519940 ~ 5521230 (+) True G1334530
TU1525057 other upstream 1310363 4734789 ~ 4937679 (+) True LOC110491218
TU1524854 other upstream 1907174 4339838 ~ 4340868 (+) True G1333963
TU1523350 other upstream 3017028 3230199 ~ 3231014 (+) True G1332826
TU1527127 other downstream 341484 6590976 ~ 6591915 (+) True G1335704
TU1527209 other downstream 514820 6764312 ~ 6768586 (+) False G1335763
TU1527336 other downstream 785382 7034874 ~ 7057970 (+) True kif20ba
TU1527405 other downstream 809409 7058901 ~ 7059543 (+) True G1335921
TU1528044 other downstream 857979 7107471 ~ 7108714 (+) True G1336428

Expression Profile