RNA id: TU1527079


Basic Information

Item Value
RNA id TU1527079
length 1655
lncRNA type inter_gene
GC content 0.40
exon number 6
gene id G1335663
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6506253 ~ 6509089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatacaacaggtgtagtagaccttactgtgaaatactgactacaacaggtgtagtagaccttactgtgaaatactgactacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccacacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttactgtgaaatactgactacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatactgactacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttactgtgaaatgctgaatactacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttactgtgaaatactgactacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttactgtgaaatgctgaatacaacaggtgtagtagaccttactgtgaaatgctgaatacaacaggtgtagtagaccttactgtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgttgaatacaacaggtgtagtagaccttactgtgaaatgcttacttacatgcccttaaccaacaatgcagttttaagaaaatagagttataTTTAAGTCTGAATAGGGAGATAGTTAACCCAACCATGGAGACAACGACCGGTCGCTGGTCTCCTTTTATCATGGCAAGTCTGAATAGAGAGATAGTTAACCCAACCATGGAGACAGGAAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1527017 lncRNA upstream 32265 6386529 ~ 6473988 (+) True G1335613
TU1527059 lncRNA upstream 42237 6463466 ~ 6464016 (+) True G1335645
TU1527030 lncRNA upstream 115121 6390850 ~ 6391132 (+) True G1335618
TU1526946 lncRNA upstream 123697 6334443 ~ 6382556 (+) True LOC110491273
TU1527002 lncRNA upstream 125617 6379748 ~ 6380636 (+) True G1335609
TU1527094 lncRNA downstream 20149 6529238 ~ 6529840 (+) True G1335676
TU1527097 lncRNA downstream 29222 6538311 ~ 6538918 (+) True G1335679
TU1527098 lncRNA downstream 30360 6539449 ~ 6540326 (+) True G1335680
TU1527092 lncRNA downstream 34266 6543355 ~ 6544169 (+) True G1335674
TU1527114 lncRNA downstream 49758 6558847 ~ 6560964 (+) True G1335691
XM_036946032.1 mRNA upstream 123697 6360588 ~ 6382556 (+) False LOC110491273
XM_036946050.1 mRNA downstream 17706 6526795 ~ 6651585 (+) True mcu
XM_036946051.1 mRNA downstream 170626 6679715 ~ 6704779 (+) True oit3
XM_036945866.1 mRNA downstream 515881 7024970 ~ 7073332 (+) False kif20ba
XM_021564636.2 mRNA downstream 616658 7125747 ~ 7128548 (+) True zgc:65997
XM_036946066.1 mRNA downstream 621958 7131047 ~ 7147600 (+) False pank1a
TU1525676 other upstream 801307 5703835 ~ 5704946 (+) True G1334592
TU1525602 other upstream 985023 5519940 ~ 5521230 (+) True G1334530
TU1525057 other upstream 1568574 4734789 ~ 4937679 (+) True LOC110491218
TU1524854 other upstream 2165385 4339838 ~ 4340868 (+) True G1333963
TU1523350 other upstream 3275239 3230199 ~ 3231014 (+) True G1332826
TU1527127 other downstream 81887 6590976 ~ 6591915 (+) True G1335704
TU1527209 other downstream 255223 6764312 ~ 6768586 (+) False G1335763
TU1527336 other downstream 525785 7034874 ~ 7057970 (+) True kif20ba
TU1527405 other downstream 549812 7058901 ~ 7059543 (+) True G1335921
TU1528044 other downstream 598382 7107471 ~ 7108714 (+) True G1336428

Expression Profile