RNA id: TU1527125


Basic Information

Item Value
RNA id TU1527125
length 432
lncRNA type intronic
GC content 0.55
exon number 3
gene id G1335702
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6585969 ~ 6588067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctcctagtgctgcaggagatgacctgtacccctcctcctccttctcctagtgctgcaggagatgacctgtacccctcctcctcctagtgctgcaggagatggcCTGTACCCCTCCTCCTAGTGCTGCAGGAGATGGCCtgtacccctcctccccttccagaCTCATACACCACATATTCTGCTCTgacctacagtgtgtgtgtgtgtgtgtgtgtgtgtgagacgacAGAGATCATCCTCTCCTCAGTTATTAACAGTGAGTTGGCAGGTAGCTCTGCAATGGTTCACCCTGTGTGAGGACACTGTGTGTGTCACGGTGGTTCCCTGTGTGAGGACTGTGTGTGTTTCACGGTGGTTCCCTGGCTTACTGCAGATCTGCTCCACAGTGTCCTCTAGGGAGGTCATTAGGGCCGAGGAAAACGAGATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1527067 lncRNA upstream 12323 6481780 ~ 6573646 (+) True G1335653
TU1527114 lncRNA upstream 25005 6558847 ~ 6560964 (+) True G1335691
TU1527092 lncRNA upstream 41800 6543355 ~ 6544169 (+) True G1335674
TU1527098 lncRNA upstream 45643 6539449 ~ 6540326 (+) True G1335680
TU1527097 lncRNA upstream 47051 6538311 ~ 6538918 (+) True G1335679
TU1527134 lncRNA downstream 23406 6611473 ~ 6611899 (+) True G1335711
TU1527146 lncRNA downstream 40489 6628556 ~ 6628812 (+) False G1335723
TU1527147 lncRNA downstream 40489 6628556 ~ 6628812 (+) True G1335723
TU1527154 lncRNA downstream 47238 6635305 ~ 6636093 (+) True G1335727
TU1527157 lncRNA downstream 51527 6639594 ~ 6640183 (+) True G1335729
XM_036946032.1 mRNA upstream 203413 6360588 ~ 6382556 (+) False LOC110491273
XM_036946051.1 mRNA downstream 91648 6679715 ~ 6704779 (+) True oit3
XM_036945866.1 mRNA downstream 436903 7024970 ~ 7073332 (+) False kif20ba
XM_021564636.2 mRNA downstream 537680 7125747 ~ 7128548 (+) True zgc:65997
XM_036946066.1 mRNA downstream 542980 7131047 ~ 7147600 (+) False pank1a
XM_036946061.1 mRNA downstream 542995 7131062 ~ 7156797 (+) False pank1a
TU1525676 other upstream 881023 5703835 ~ 5704946 (+) True G1334592
TU1525602 other upstream 1064739 5519940 ~ 5521230 (+) True G1334530
TU1525057 other upstream 1648290 4734789 ~ 4937679 (+) True LOC110491218
TU1524854 other upstream 2245101 4339838 ~ 4340868 (+) True G1333963
TU1523350 other upstream 3354955 3230199 ~ 3231014 (+) True G1332826
TU1527127 other downstream 2909 6590976 ~ 6591915 (+) True G1335704
TU1527209 other downstream 176245 6764312 ~ 6768586 (+) False G1335763
TU1527336 other downstream 446807 7034874 ~ 7057970 (+) True kif20ba
TU1527405 other downstream 470834 7058901 ~ 7059543 (+) True G1335921
TU1528044 other downstream 519404 7107471 ~ 7108714 (+) True G1336428

Expression Profile