RNA id: TU1528044


Basic Information

Item Value
RNA id TU1528044
length 1244
RNA type TUCP
GC content 0.44
exon number 1
gene id G1336428
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 7107471 ~ 7108714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GagaaaatgtaaccactctcaaattcgtagacagagctatggatgcaaggactgaccatccattatgtCAACATTTGTTTTAAACTGTGTTTTGGGACTAAATagggtttgtttacatttactttgtggACAAAAATTGGACCAAAAAAACATTATATTTCTGGTTCTCATGgtgtgtgacagttgaactaagctcatgatggATTTCTAAGTTATATATTTCAAGAATCAATGTTGTATATCTGTAATTTAAgtacaaaaatggatgtagcaactgctgattgcccttTTAATCAACACCTAACCATCATTCATCGTTCTGAGGGGTCATGTTTGGGCAACCATAGCACAACAAGCATAACCATAGAACAAACCTTCAGACGAGCTTCTCTGCCATCcgactctccttccgtggcctccataTCCatctgctcttaaatacaagtcaaactaaatggtttggacactgtgttaactaacctccagatgagcttcaatgccatacaactctccttccgtggcctccatctgctcttaaatgcaagtcaaactaaatgcatgctcttcaaccgatcgctgcccacacctgcccgcccgtccagcatcactactctgaacggttatgacttagaatatgtggacaactacaaatacctgggtgtctggttagactgtaaactccagactcacattaaggatctccaatccaaaattaaagctagaatcggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacataccctcgtaaaactgaccatcctaccgatccttgactttggcgatgtcatttataaaatagcctccaacactctactcagaaaattggatgcagtctatcatagtgccatctgttttgtcatcaaagcctcatatactacccaccactgcgacctgtacgctctcgttggctggccctcgcttcatattcaaacccactggctccaggtcatctataagtctttgctaagtaaagccccgccttgtctcagctctctggtcaccatagcagcacccacccgtagcacgtgctccagcaggtatatttcactggtcacccccaaagccaattcctcctttggccgcctctccttccagttttctgctgccaaagactggaacgaactgcaaaaatcactgaagctggagactcatatctccctcactagctttaagcaccagctgtcagagcagctcacagatcaatgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1528043 lncRNA upstream 377 7106692 ~ 7107094 (+) True G1336427
TU1528042 lncRNA upstream 4515 7102727 ~ 7102956 (+) True G1336426
TU1528037 lncRNA upstream 10334 7096933 ~ 7097137 (+) True G1336421
TU1528000 lncRNA upstream 11940 7095314 ~ 7095531 (+) True G1336401
TU1527998 lncRNA upstream 12409 7094735 ~ 7095062 (+) True G1336399
TU1528049 lncRNA downstream 6151 7114865 ~ 7115194 (+) True G1336431
TU1528031 lncRNA downstream 37366 7146080 ~ 7147958 (+) True pank1a
TU1528033 lncRNA downstream 40047 7148761 ~ 7149574 (+) True G1336417
TU1528029 lncRNA downstream 40574 7149288 ~ 7151471 (+) True G1336413
TU1528026 lncRNA downstream 63999 7172713 ~ 7173265 (+) True G1336410
XM_036945866.1 mRNA upstream 34139 7024970 ~ 7073332 (+) False kif20ba
XM_036946051.1 mRNA upstream 402692 6679715 ~ 6704779 (+) True oit3
XM_036946050.1 mRNA upstream 455886 6526795 ~ 6651585 (+) True mcu
XM_036946034.1 mRNA upstream 724915 6360588 ~ 6382556 (+) False LOC110491273
XM_021564636.2 mRNA downstream 17033 7125747 ~ 7128548 (+) True zgc:65997
XM_036946066.1 mRNA downstream 22333 7131047 ~ 7147600 (+) False pank1a
XM_036946061.1 mRNA downstream 22348 7131062 ~ 7156797 (+) False pank1a
XM_036946063.1 mRNA downstream 22358 7131072 ~ 7156797 (+) False pank1a
XM_036946064.1 mRNA downstream 24443 7133157 ~ 7156797 (+) False pank1a
TU1527405 other upstream 47928 7058901 ~ 7059543 (+) True G1335921
TU1527336 other upstream 49501 7034874 ~ 7057970 (+) True kif20ba
TU1527209 other upstream 338885 6764312 ~ 6768586 (+) False G1335763
TU1527127 other upstream 515556 6590976 ~ 6591915 (+) True G1335704
TU1525676 other upstream 1402525 5703835 ~ 5704946 (+) True G1334592
TU1528002 other downstream 55758 7164472 ~ 7171710 (+) False LOC110491290
TU1528003 other downstream 55758 7164472 ~ 7171710 (+) True LOC110491290
TU1528316 other downstream 498000 7606714 ~ 7610802 (+) True G1336651
TU1529215 other downstream 1089048 8197762 ~ 8198459 (+) False G1337433
TU1529216 other downstream 1089253 8197967 ~ 8198459 (+) True G1337433

Expression Profile